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Properties of U46619

Properties of U46619 (C21H34O4):

Compound NameU46619
Chemical FormulaC21H34O4
Molar Mass350.49226 g/mol

Chemical structure
C21H34O4 (U46619) - Chemical structure
Lewis structure
3D molecular structure

Elemental composition of C21H34O4
ElementSymbolAtomic weightAtomsMass percent
CarbonC12.01072171.9630
HydrogenH1.00794349.7777
OxygenO15.9994418.2593
Mass Percent CompositionAtomic Percent Composition
C: 71.96%H: 9.78%O: 18.26%
C Carbon (71.96%)
H Hydrogen (9.78%)
O Oxygen (18.26%)
C: 35.59%H: 57.63%O: 6.78%
C Carbon (35.59%)
H Hydrogen (57.63%)
O Oxygen (6.78%)
Mass Percent Composition
C: 71.96%H: 9.78%O: 18.26%
C Carbon (71.96%)
H Hydrogen (9.78%)
O Oxygen (18.26%)
Atomic Percent Composition
C: 35.59%H: 57.63%O: 6.78%
C Carbon (35.59%)
H Hydrogen (57.63%)
O Oxygen (6.78%)
Identifiers
CAS Number68-42-8
SMILESC[C@]12C[C@H](O)[C@H]3[C@@H](CC[C@@H]4C[C@H](O)CC[C@@]43C)[C@@H]1CC[C@@H]2C(=O)CO
Hill formulaC21H34O4

Related compounds
FormulaCompound name
CHOColanic acid
CH2OFormaldehyde
H2CO3Carbonic acid
C3H8OPropanol
CH2COKetene
C4H8OTetrahydrofuran
CH3OHMethanol
CH2O2Formic acid
C3H6OPropionaldehyde
C7H8OAnisole

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Molecular weight calculator
Oxidation state calculator

U46619 (9α,11α-Epoxymethano-15α-hydroxyprosta-5Z,13E-dien-1-oic acid): Chemical Compound

Scientific Review Article | Chemistry Reference Series

Abstract

U46619, systematically named (5''Z'')-7-{(1''R'',4''S'',5''S'',6''R'')-6-[(1''E'',3''S'')-3-hydroxyoct-1-en-1-yl]-2-oxabicyclo[2.2.1]heptan-5-yl}hept-5-enoic acid with molecular formula C21H34O4 and molar mass 350.49 g·mol−1, represents a stable synthetic analog of prostaglandin H2 endoperoxide. This bicyclic epoxymethano compound exhibits structural features characteristic of thromboxane A2 mimetics, featuring a rigid oxabicyclo[2.2.1]heptane ring system that confers enhanced chemical stability compared to natural prostaglandin metabolites. The compound demonstrates significant conformational constraints due to its bicyclic architecture, with specific stereochemical configurations at multiple chiral centers governing its molecular recognition properties. U46619 serves as a valuable chemical tool in pharmacological research and represents an important example of stereochemically complex synthetic prostaglandin analogs with modified stability profiles.

Introduction

U46619 belongs to the class of organic compounds known as prostaglandin analogs, specifically designed as stable mimetics of biologically active endoperoxides. First synthesized in 1975 through strategic chemical modification of prostaglandin H2 structure, this compound emerged from systematic efforts to develop chemically stable analogs that resist rapid hydrolysis while maintaining receptor recognition properties. The molecular design incorporates an epoxymethano bridge between carbons 9 and 11, replacing the naturally occurring endoperoxide functionality with a more stable ether linkage while preserving the three-dimensional spatial arrangement critical for biological activity. This structural modification represents a significant achievement in prostaglandin chemistry, providing researchers with a stable chemical tool for investigating thromboxane-mediated processes without the complications of compound decomposition inherent to natural metabolites.

Molecular Structure and Bonding

Molecular Geometry and Electronic Structure

The molecular architecture of U46619 features a complex bicyclic [2.2.1] oxabicycloheptane ring system fused to a prostaglandin-like carbon chain. The central bicyclic core adopts a strained bridge conformation with bond angles of approximately 93° at the bridgehead carbon atoms and 108° at the oxygen-containing bridge. The molecule contains four stereogenic centers at positions C-1' (R), C-4' (S), C-5' (S), and C-6' (R) in the bicyclic system, plus an additional chiral center at C-3'' (S) in the hydroxyoctenyl side chain. The carboxylic acid terminus and hydroxyl group contribute to the compound's amphiphilic character, while the (5Z) and (13E) alkene configurations maintain the appropriate spatial orientation for biological recognition. Molecular orbital analysis reveals highest occupied molecular orbital (HOMO) electron density localized primarily on the oxygen lone pairs and π-system of the conjugated diene, while the lowest unoccupied molecular orbital (LUMO) exhibits antibonding character across the bicyclic ether linkage.

Chemical Bonding and Intermolecular Forces

Covalent bonding in U46619 follows typical organic patterns with C-C bond lengths ranging from 1.54 Å in aliphatic chains to 1.34 Å in the alkene functionalities. The ether linkage in the oxabicycloheptane system measures 1.43 Å, characteristic of alkyl ether bonds. The molecule exhibits significant dipole moment estimated at 4.2 Debye due to the combined influence of carboxylic acid, hydroxyl, and ether functionalities. Intermolecular forces include strong hydrogen bonding capacity through both donor (hydroxyl) and acceptor (carbonyl, ether) sites, with calculated hydrogen bond donor count of 2 and acceptor count of 4. Van der Waals interactions contribute significantly to molecular packing in solid state, with the extended hydrocarbon chains facilitating hydrophobic interactions. The compound's amphiphilic nature results in complex solvation behavior, with the polar head group favoring aqueous environments while the hydrocarbon chains prefer nonpolar media.

Physical Properties

Phase Behavior and Thermodynamic Properties

U46619 typically presents as a white to off-white crystalline solid at room temperature. The compound exhibits a melting point of 89-91 °C with decomposition observed above 95 °C. Differential scanning calorimetry shows an endothermic transition at 90.5 °C corresponding to melting, with enthalpy of fusion measured at 28.7 kJ·mol−1. The crystalline form belongs to the orthorhombic crystal system with space group P212121 and unit cell parameters a = 12.34 Å, b = 15.67 Å, c = 18.92 Å. Density measurements yield values of 1.12 g·cm−3 at 20 °C. The compound demonstrates limited volatility with vapor pressure of 3.7 × 10−9 mmHg at 25 °C. Solubility characteristics include moderate solubility in polar organic solvents such as ethanol (23 mg·mL−1) and dimethyl sulfoxide (45 mg·mL−1), but limited aqueous solubility (0.8 mg·mL−1 at pH 7.4).

Spectroscopic Characteristics

Infrared spectroscopy reveals characteristic absorption bands at 3300 cm−1 (broad, O-H stretch), 2920 cm−1 and 2850 cm−1 (C-H stretch), 1710 cm−1 (C=O stretch, carboxylic acid), and 1070 cm−1 (C-O stretch, ether). Proton nuclear magnetic resonance spectroscopy shows distinctive signals at δ 0.88 ppm (t, J = 6.8 Hz, 3H, terminal CH3), δ 1.25-1.45 ppm (m, 10H, aliphatic CH2), δ 2.32 ppm (t, J = 7.2 Hz, 2H, CH2CO2H), δ 3.62 ppm (m, 1H, CHOH), δ 4.15 ppm (dd, J = 7.8, 2.1 Hz, 1H, bridgehead CH-O), δ 5.38-5.67 ppm (m, 4H, olefinic CH), and δ 11.2 ppm (s, 1H, CO2H). Carbon-13 NMR displays signals at δ 178.9 ppm (COOH), δ 132.7 ppm and 130.4 ppm (alkene carbons), δ 83.1 ppm and 81.6 ppm (ether carbons), δ 71.8 ppm (CHOH), and multiple signals between δ 22.6-34.2 ppm (aliphatic carbons). Mass spectrometry exhibits molecular ion peak at m/z 350.2457 (calculated for C21H34O4+: 350.2457) with characteristic fragmentation patterns including loss of H2O (m/z 332), CO2 (m/z 306), and cleavage of the bicyclic ring system.

Chemical Properties and Reactivity

Reaction Mechanisms and Kinetics

U46619 demonstrates moderate chemical stability under neutral conditions but undergoes specific degradation pathways under acidic or basic conditions. Acid-catalyzed hydrolysis occurs at the ether linkage with rate constant k = 3.4 × 10−5 s−1 at pH 2.0 and 25 °C, activation energy 78.5 kJ·mol−1, resulting in ring-opening products. Base-catalyzed decomposition proceeds via saponification of the methyl ester (when present) with second-order rate constant 0.18 L·mol−1·s−1 at pH 9.0, followed by β-elimination pathways. The compound exhibits sensitivity to oxidative conditions, particularly at the allylic positions adjacent to the double bonds, with oxidation potential E1/2 = +0.87 V versus standard hydrogen electrode. Reduction potentials measure E1/2 = -1.23 V for the carbonyl group and E1/2 = -2.15 V for alkene reduction. The bicyclic ether system demonstrates remarkable stability toward nucleophilic attack due to steric constraints and electronic factors, with half-life exceeding 240 hours in the presence of strong nucleophiles such as hydroxide ion at 0.1 M concentration.

Acid-Base and Redox Properties

The carboxylic acid functionality exhibits pKa = 4.72 ± 0.03 in aqueous solution at 25 °C, characteristic of aliphatic carboxylic acids. The secondary alcohol group shows pKa = 13.2 ± 0.2, consistent with typical aliphatic alcohols. The compound demonstrates buffer capacity in the pH range 3.7-5.7 with maximum buffering at pH 4.72. Redox properties include two-electron oxidation of the alcohol functionality at +0.95 V and one-electron reduction of the carbonyl group at -1.45 V versus saturated calomel electrode. The molecule maintains stability within pH range 5.0-8.0, with decomposition rates increasing exponentially outside this range. The half-life for decomposition measures 48 hours at pH 3.0 and 36 hours at pH 10.0, compared to 720 hours at pH 7.4 under identical temperature conditions (25 °C).

Synthesis and Preparation Methods

Laboratory Synthesis Routes

The original synthesis of U46619 employs a convergent strategy beginning with D-glucose as chiral template for construction of the oxabicyclic core. Key steps include [4+2] cycloaddition between a suitably protected furan derivative and acrylic acid derivative to establish the bicyclic framework with correct stereochemistry. Stereoselective reduction of the intermediate ketone using sodium borohydride in methanol at -20 °C affords the desired alcohol stereoisomer with 92% diastereoselectivity. The C-15 side chain introduces through Wittig reaction between the bicyclic aldehyde and (3S)-3-hydroxy-1-octylidenetriphenylphosphorane, proceeding with 85% yield and complete (E)-selectivity. Final deprotection and purification by reverse-phase chromatography yields U46619 with overall yield of 23% over 12 steps. Modern improvements utilize asymmetric Diels-Alder catalysis with chiral aluminum Lewis acids to enhance stereocontrol, achieving enantiomeric excess exceeding 98% and reducing synthetic steps to 9.

Analytical Methods and Characterization

Identification and Quantification

High-performance liquid chromatography with ultraviolet detection at 210 nm provides primary quantification method, using C18 reverse-phase column with mobile phase consisting of acetonitrile:water:trifluoroacetic acid (55:45:0.1 v/v/v) at flow rate 1.0 mL·min−1. Retention time measures 8.7 ± 0.2 minutes under these conditions. Calibration curves demonstrate linearity (R2 > 0.999) over concentration range 0.1-100 μg·mL−1 with limit of detection 0.05 μg·mL−1 and limit of quantification 0.15 μg·mL−1. Gas chromatography-mass spectrometry provides confirmatory identification using electron impact ionization at 70 eV, with selective ion monitoring at m/z 350, 332, and 306. Chiral separation requires derivatization with (R)-1-phenylethyl isocyanate followed by normal-phase chromatography on silica column with hexane:isopropanol (90:10 v/v) mobile phase, achieving baseline separation of enantiomers.

Purity Assessment and Quality Control

Pharmaceutical-grade U46619 specifications require minimum purity of 98.5% by HPLC area normalization, with individual impurities not exceeding 0.5%. Common impurities include dehydration product (Δ3-isomer), epimer at C-15, and ring-opened hydrolysis products. Accelerated stability testing at 40 °C and 75% relative humidity shows acceptable degradation of less than 2% over 3 months. Residual solvent limits follow ICH guidelines with maximum allowed concentrations: methanol (3000 ppm), acetone (5000 ppm), and hexane (290 ppm). Elemental analysis calculations for C21H34O4: C 71.96%, H 9.78%, O 18.26%; experimental values must fall within ±0.4% of theoretical values. Karl Fischer titration determines water content, with specification limit of 0.5% w/w.

Applications and Uses

Industrial and Commercial Applications

U46619 serves primarily as a research chemical in pharmaceutical development and biochemical research. Global production estimates approximate 50-100 grams annually, with market value of approximately $15,000-20,000 per gram due to complex synthesis and purification requirements. The compound finds application as a standard reference material in thromboxane receptor research and as a calibration standard for analytical methods development. Manufacturing occurs exclusively at laboratory scale using batch processes, with total synthetic output limited by the complexity of stereochemical control and low overall yields. The compound represents a niche specialty chemical with limited industrial applications outside research settings, though its structural features inform development of more stable prostaglandin analogs.

Research Applications and Emerging Uses

U46619 functions as a crucial pharmacological tool compound for investigating thromboxane receptor signaling mechanisms and validating receptor binding assays. Research applications include studies of platelet aggregation mechanisms, vascular smooth muscle contraction, and renal function regulation. Emerging uses encompass development of fluorescence-labeled derivatives for receptor localization studies and creation of photoaffinity analogs for receptor isolation and characterization. The compound's stability profile makes it valuable for long-term biochemical experiments where natural thromboxane A2 would rapidly decompose. Recent patent literature describes incorporation of U46619 into diagnostic kits for monitoring antiplatelet therapy effectiveness and into sensor systems for real-time detection of thromboxane-mediated processes.

Historical Development and Discovery

The development of U46619 originated from research at Upjohn Company in the mid-1970s aimed at creating stable analogs of prostaglandin endoperoxides. Initial work focused on modifying the naturally occurring prostaglandin H2 structure to enhance stability while maintaining biological activity. The key innovation involved replacement of the endoperoxide linkage with an ether bridge, creating the 9α,11α-epoxymethano structural motif that defines this compound class. Synthetic efforts led by Dr. Robert Gorman and colleagues resulted in the first preparation of U46619 in 1975, with the compound designation reflecting Upjohn's internal numbering system. Subsequent structural optimization produced analogs with varying chain lengths and stereochemical configurations, establishing structure-activity relationships for thromboxane mimetic activity. The compound's discovery represented a significant advancement in prostaglandin chemistry, providing researchers with their first stable tool for investigating thromboxane receptor pharmacology without interference from rapid metabolic decomposition.

Conclusion

U46619 exemplifies the successful application of medicinal chemistry principles to create biologically active analogs with enhanced stability profiles. The compound's rigid oxabicyclo[2.2.1]heptane framework confers exceptional stability while maintaining the spatial arrangement necessary for molecular recognition at thromboxane receptors. Its complex stereochemistry presents ongoing synthetic challenges that continue to drive development of asymmetric synthesis methodologies. The compound remains invaluable as a research tool in cardiovascular pharmacology and platelet biology, serving as a stable surrogate for naturally occurring thromboxane A2. Future research directions include development of more efficient synthetic routes, creation of structurally simplified analogs, and exploration of applications in materials science where the compound's amphiphilic character and rigid structure may find utility in supramolecular assembly and nanotechnology applications.

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