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Properties of Emamectin

Properties of Emamectin (C49H75NO13):

Compound NameEmamectin
Chemical FormulaC49H75NO13
Molar Mass886.1187 g/mol

Chemical structure
C49H75NO13 (Emamectin) - Chemical structure
Lewis structure
3D molecular structure
Physical properties
AppearanceWhite or faintly yellow powder
Solubility0.05 g/100mL
Melting141.00 °C
Helium -270.973
Hafnium carbide 3958

Alternative Names

4-Deoxy-4-epi-methylamino-avermectin B1
Epi-methylamino-4-deoxy-avermectin
EMA
GWN 1972

Elemental composition of C49H75NO13
ElementSymbolAtomic weightAtomsMass percent
CarbonC12.01074966.4160
HydrogenH1.00794758.5311
NitrogenN14.006711.5807
OxygenO15.99941323.4723
Mass Percent CompositionAtomic Percent Composition
C: 66.42%H: 8.53%N: 1.58%O: 23.47%
C Carbon (66.42%)
H Hydrogen (8.53%)
N Nitrogen (1.58%)
O Oxygen (23.47%)
C: 35.51%H: 54.35%N: 0.72%O: 9.42%
C Carbon (35.51%)
H Hydrogen (54.35%)
N Nitrogen (0.72%)
O Oxygen (9.42%)
Mass Percent Composition
C: 66.42%H: 8.53%N: 1.58%O: 23.47%
C Carbon (66.42%)
H Hydrogen (8.53%)
N Nitrogen (1.58%)
O Oxygen (23.47%)
Atomic Percent Composition
C: 35.51%H: 54.35%N: 0.72%O: 9.42%
C Carbon (35.51%)
H Hydrogen (54.35%)
N Nitrogen (0.72%)
O Oxygen (9.42%)
Identifiers
CAS Number119791-41-2
SMILESC/C([C@](O[C@H]1C[C@H](OC)[C@](O[C@@H]2O[C@H](C)[C@@H](NC)[C@H](OC)C2)([H])[C@H](C)O1)([H])[C@@H](C)/C=C/C=C(CO3)/[C@@]([C@@]3([H])[C@H](O)C(C)=C4)(O)[C@@H]4C(O5)=O)=C\C[C@@H]6C[C@H]5C[C@]7(C=C[C@H](C)[C@]([C@@H](C)CC)([H])O7)O6
Hill formulaC49H75NO13

Related compounds
FormulaCompound name
CHNOIsocyanic acid
HCNOFulminic acid
CH3NOFormamide
CH5NOAminomethanol
CNOH5Methoxyamine
C2HNOFormyl cyanide
C3H7NOPropionamide
C2H3NOMethyl isocyanate
C3H5NOEthyl isocyanate
C4H7NOPropyl isocyanate

Related
Molecular weight calculator
Oxidation state calculator

Emamectin (Unknown): Chemical Compound

Scientific Review Article | Chemistry Reference Series

Abstract

Emamectin represents a semi-synthetic derivative of the naturally occurring avermectin family, specifically derived from abamectin through structural modification at the 4″-position. This complex macrocyclic lactone exhibits the molecular formula C49H75NO13 and typically presents as a white to faintly yellow crystalline powder with a melting point range of 141-146 °C. The compound demonstrates limited aqueous solubility of approximately 30-50 ppm at neutral pH but exhibits significant lipophilic character. Emamectin functions through potent activation of glutamate-gated chloride channels in invertebrate nervous systems, leading to disrupted neurotransmission. Its primary commercial significance lies in agricultural pest control applications, particularly against lepidopteran species, with application rates as low as 6 grams per acre demonstrating efficacy. The benzoate salt formulation provides enhanced stability and handling characteristics for commercial applications.

Introduction

Emamectin belongs to the class of macrocyclic lactones known as avermectins, which are structurally complex organic compounds derived from natural fermentation products of Streptomyces avermitilis. This compound represents a semi-synthetic modification of abamectin, specifically featuring a 4″-deoxy-4″-methylamino substitution that enhances its insecticidal properties. The structural complexity of emamectin includes multiple chiral centers, complex ring systems, and glycosidic linkages that contribute to its unique biological activity and physicochemical properties.

First developed as investigative compound MK-0244 by Merck & Co., emamectin entered commercial use in 1997 with initial registrations in Japan and Palestine. The compound's mechanism of action involves potent agonism of invertebrate-specific neurotransmitter receptors, providing selective toxicity against arthropod pests while maintaining favorable mammalian safety profiles. The commercial formulation typically utilizes the benzoate salt to improve stability and handling characteristics.

Molecular Structure and Bonding

Molecular Geometry and Electronic Structure

Emamectin possesses a pentacyclic ring system characteristic of avermectin compounds, consisting of a 16-membered macrocyclic lactone core with attached disaccharide moiety comprising modified oleandrose units. The molecular architecture includes multiple stereocenters with specific configurations: the natural fermentation-derived stereochemistry is preserved in the semi-synthetic modification process. The 4″-epimethylamino substitution introduces a tertiary amine functionality that significantly influences the compound's electronic distribution and biological activity.

X-ray crystallographic analysis of related avermectin compounds reveals that the macrocyclic lactone adopts a relatively rigid conformation with limited flexibility. The disaccharide moiety extends from the aglycone core in a specific spatial orientation that facilitates molecular recognition at biological targets. Electronic distribution analysis indicates localized electron density around oxygen atoms in the lactone and glycosidic bonds, while the conjugated diene system in the spiroketal portion demonstrates delocalized π-electron character.

Chemical Bonding and Intermolecular Forces

The covalent bonding pattern in emamectin includes characteristic polyketide-derived carbon frameworks with extensive oxygenation patterns. Bond lengths determined crystallographically for analogous compounds show C-C bonds averaging 1.54 Å in aliphatic regions and shortened to 1.34 Å in conjugated systems. The lactone carbonyl bond length measures approximately 1.21 Å, consistent with typical carbonyl bond distances.

Intermolecular forces dominate the solid-state behavior of emamectin, with hydrogen bonding capacity provided by multiple hydroxyl groups, the tertiary amine, and lactone carbonyl functionality. The compound exhibits significant van der Waals interactions due to its extensive hydrophobic surface area. Dipole moment calculations for avermectin analogs indicate values ranging from 5-7 Debye, reflecting the polar nature of the glycosylated macrocycle. The lipophilic index, calculated from structural features, exceeds 6.0, indicating strong hydrophobic character.

Physical Properties

Phase Behavior and Thermodynamic Properties

Emamectin benzoate presents as a crystalline solid with a characteristic melting point range of 141-146 °C. The compound demonstrates thermal stability up to approximately 200 °C, beyond which decomposition occurs through multiple pathways including dehydration, lactone ring opening, and sugar moiety degradation. Differential scanning calorimetry shows endothermic transitions corresponding to melting and decomposition events.

The density of crystalline emamectin benzoate measures approximately 1.2 g/cm³ based on analogous avermectin compounds. Solubility characteristics reveal pronounced hydrophobicity, with water solubility limited to 30-50 mg/L at pH 7. The compound demonstrates significantly higher solubility in organic solvents including acetone (>500 g/L), methanol (200 g/L), and toluene (150 g/L). Partition coefficient measurements indicate log P values of 4.5-5.0 in octanol-water systems, consistent with its lipophilic character.

Spectroscopic Characteristics

Infrared spectroscopy of emamectin displays characteristic absorption bands at 3460 cm⁻¹ (O-H and N-H stretching), 2930-2870 cm⁻¹ (C-H stretching), 1735 cm⁻¹ (lactone carbonyl), and 1050-1150 cm⁻¹ (C-O-C glycosidic linkages). The fingerprint region below 1000 cm⁻¹ shows complex patterns unique to the avermectin skeleton.

Nuclear magnetic resonance spectroscopy reveals complex 1H NMR patterns with characteristic signals between δ 0.8-1.2 ppm for methyl groups, δ 2.8-3.0 ppm for the N-methyl protons, and δ 3.2-5.5 ppm for sugar and methine protons. 13C NMR spectra show lactone carbonyl resonance at δ 175 ppm, olefinic carbons between δ 120-140 ppm, and anomeric carbons at δ 95-100 ppm. Mass spectrometric analysis provides molecular ion confirmation at m/z 886.5 for the B1a component and 872.5 for B1b, with fragmentation patterns characteristic of avermectin glycosides.

Chemical Properties and Reactivity

Reaction Mechanisms and Kinetics

Emamectin demonstrates stability under neutral and mildly acidic conditions but undergoes hydrolysis under strongly acidic or basic conditions. The lactone ring shows particular susceptibility to base-catalyzed hydrolysis, with half-life measurements of approximately 30 days at pH 9 and 25 °C. The glycosidic linkages exhibit relative stability across pH ranges 3-8, with cleavage occurring under strongly acidic conditions.

Photodegradation represents a significant decomposition pathway, with aqueous solution half-lives of 2-5 days under natural sunlight exposure. The conjugated diene system undergoes [4+2] cycloaddition reactions and E-Z photoisomerization upon UV exposure. Oxidation reactions primarily affect the olefinic bonds, with ozone and singlet oxygen attacking the diene system preferentially.

Acid-Base and Redox Properties

The tertiary amine functionality at the 4″-position confers weak basic character to emamectin, with measured pKa values of approximately 7.5 for the conjugate acid. This property facilitates salt formation with organic acids such as benzoic acid, yielding crystalline products with improved handling characteristics. The compound demonstrates limited buffer capacity within the pH range 5-9.

Redox properties indicate moderate susceptibility to oxidation, with the olefinic system undergoing epoxidation and hydroxylation reactions. Cyclic voltammetry studies show irreversible oxidation waves at +0.8 to +1.2 V versus standard hydrogen electrode, corresponding to oxidation of the olefinic electron systems. Reduction potentials occur at -1.5 to -2.0 V, associated with carbonyl group reduction.

Synthesis and Preparation Methods

Laboratory Synthesis Routes

Emamectin synthesis proceeds through semi-synthetic modification of abamectin, which is itself a fermentation product of Streptomyces avermitilis. The key transformation involves selective oxidation of the 4″-hydroxyl group followed by reductive amination to introduce the methylamino functionality. Typical laboratory procedures utilize Dess-Martin periodinane or similar reagents for oxidation to the 4″-keto intermediate, followed by reductive amination with methylamine and sodium cyanoborohydride.

The reaction typically proceeds with 60-70% overall yield and requires careful control of reaction conditions to prevent epimerization at adjacent chiral centers. Purification employs chromatographic techniques including silica gel and reverse-phase chromatography to separate the B1a and B1b components. Final product characterization combines spectroscopic methods with chiral HPLC analysis to verify stereochemical integrity.

Industrial Production Methods

Commercial production of emamectin utilizes large-scale fermentation of Streptomyces avermitilis optimized for abamectin production, followed by chemical modification steps. Fermentation occurs in stainless steel bioreactors of 50-100 m³ capacity using complex media containing glucose, soybean meal, and mineral salts. Typical fermentation titers reach 1-2 g/L of abamectin after 10-14 days of controlled fermentation.

The downstream processing involves extraction with organic solvents, purification through crystallization, and subsequent chemical modification. Process optimization has focused on reducing solvent usage, improving catalyst recycling, and minimizing waste generation. The final emamectin benzoate product undergoes quality control testing including HPLC purity assessment (>95% total B1a+B1b), residual solvent analysis, and crystallinity evaluation.

Analytical Methods and Characterization

Identification and Quantification

High-performance liquid chromatography with UV detection at 245 nm provides the primary analytical method for emamectin quantification. Reverse-phase C18 columns with acetonitrile-water mobile phases enable separation of B1a and B1b components with retention times of 12.5 and 14.2 minutes respectively under gradient elution conditions. Method validation demonstrates linear response from 0.1-100 μg/mL with detection limits of 0.05 μg/mL.

Liquid chromatography-mass spectrometry provides confirmatory identification using characteristic ion fragments at m/z 886.5 and 872.5 for protonated molecules of B1a and B1b components. Tandem mass spectrometry reveals diagnostic fragmentation patterns including loss of sugar moieties (m/z 569 and 555) and subsequent decomposition of the aglycone portion.

Purity Assessment and Quality Control

Quality specifications for technical-grade emamectin benzoate require minimum 90% total avermectin content with the B1a component comprising not less than 85% of total avermectins. Related substances include starting material abamectin (limit 1.0%), 4″-keto intermediate (limit 0.5%), and various decomposition products. Residual solvent limits follow ICH guidelines with particular attention to methanol (3000 ppm), acetone (5000 ppm), and toluene (890 ppm).

Stability testing under accelerated conditions (40 °C, 75% relative humidity) shows less than 5% decomposition over six months when protected from light. Long-term stability studies indicate shelf life exceeding 24 months under recommended storage conditions in sealed containers with desiccant.

Applications and Uses

Industrial and Commercial Applications

Emamectin benzoate finds extensive application in agricultural pest control, particularly against lepidopteran species in various crops including cotton, vegetables, and fruits. Application rates typically range from 5-15 g active ingredient per hectare, applied as foliar sprays with appropriate adjuvants to enhance coverage and rainfastness. The compound's translaminar movement within plant tissues provides protection against leaf-mining and boring insects.

In forestry applications, trunk injection methods deliver emamectin for protection against wood-boring insects including emerald ash borer and pine beetles. These applications utilize specialized equipment to inject concentrated formulations directly into tree vascular systems, providing systemic protection for extended periods. The compound's persistence in woody tissues ranges from 6-24 months depending on tree species and application method.

Research Applications and Emerging Uses

Research applications explore emamectin's potential in controlling parasitic crustaceans in aquaculture, particularly sea lice infestations in salmon farming. Formulation development focuses on creating stable medicated feeds that deliver effective doses while minimizing environmental release. Studies investigate pharmacokinetic properties in fish species, including absorption, distribution, metabolism, and excretion patterns.

Emerging research examines structure-activity relationships within the avermectin class, seeking modifications that enhance selectivity and reduce environmental persistence. Synthetic efforts focus on creating analogs with improved photostability and altered physicochemical properties for specific application scenarios. Biotechnology approaches explore biosynthetic pathway engineering to produce novel avermectin derivatives through fermentation.

Historical Development and Discovery

The discovery of emamectin traces to systematic structure-activity relationship studies within the avermectin class conducted during the 1980s. Researchers at Merck Research Laboratories identified that modification at the 4″-position of abamectin significantly enhanced insecticidal activity while maintaining favorable mammalian toxicity profiles. The key invention by Regina D. Leseota, Pradip K. Mookerjee, John Misselbrook, and Robert F. Peterson Jr. resulted in U.S. Patent 6,291,464 issued in 2001.

Development efforts focused on optimizing the synthetic route from fermentation-derived abamectin, scaling up production processes, and establishing analytical methods for quality control. Registration in initial markets during 1997 provided the foundation for expanded global approvals across multiple crop sectors. Ongoing development has refined formulation technology to enhance performance and reduce environmental impact.

Conclusion

Emamectin represents a significant advancement in pest control chemistry, combining the complex natural architecture of avermectins with targeted synthetic modification to enhance biological activity. Its unique mechanism of action involving chloride channel activation provides effective control of resistant insect populations while maintaining selectivity toward non-target organisms. The compound's physicochemical properties, particularly its lipophilic character and limited water solubility, present both advantages for pest control efficacy and challenges for environmental fate.

Future research directions include further refinement of synthesis methodologies to reduce production costs and environmental impact, development of advanced formulations to improve application efficiency, and exploration of new application areas in animal health and specialty pest control. The continued evolution of resistance management strategies will likely incorporate emamectin into rotation programs with other mode-of-action classes to preserve its long-term utility in integrated pest management systems.

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