Properties of C9H9N3O2 (Carbendazim):
Alternative NamesMercarzole Carbendazole Elemental composition of C9H9N3O2
Related compounds
Carbendazim (C₉H₉N₃O₂): Chemical CompoundScientific Review Article | Chemistry Reference Series
AbstractCarbendazim, systematically named methyl 1H-benzimidazol-2-ylcarbamate with molecular formula C₉H₉N₃O₂ and molar mass 191.19 g·mol⁻¹, represents a significant benzimidazole carbamate fungicide compound. This heterocyclic organic compound exhibits a crystalline white to light gray powder appearance with a density of 1.45 g·cm⁻³ and melting point range of 302-307°C accompanied by decomposition. The compound demonstrates limited aqueous solubility of 8 mg·L⁻¹ at standard temperature and pressure but shows improved solubility in organic solvents including acetone. Carbendazim manifests acidic character with pKa value of 4.48, indicating proton-donating capability from the carbamate nitrogen. Its molecular structure features a benzimidazole ring system conjugated with a carbamate functional group, creating extended π-electron delocalization that influences both spectroscopic properties and chemical reactivity. The compound serves as a fundamental building block in agricultural chemistry and finds extensive application in fungal pathogen control. IntroductionCarbendazim belongs to the benzimidazole class of systemic fungicides, first developed during the 1960s as part of broader research into heterocyclic antifungal agents. This organic compound occupies a significant position in agricultural chemistry due to its broad-spectrum antifungal activity and systemic properties within plant tissues. The compound functions through specific biochemical inhibition mechanisms, primarily targeting fungal microtubule assembly. Chemically classified as a carbamate ester derivative of 2-aminobenzimidazole, Carbendazim represents the active metabolite of the prodrug benomyl, which hydrolyzes under biological conditions to yield the active fungicidal compound. The molecular architecture combines a planar benzimidazole system with a carbamate substituent, creating distinctive electronic properties that govern both its biological activity and chemical behavior. Industrial production exceeds several thousand tons annually worldwide, establishing Carbendazim as a commercially significant specialty chemical with well-characterized physicochemical properties. Molecular Structure and BondingMolecular Geometry and Electronic StructureThe molecular structure of Carbendazim consists of a benzimidazole ring system substituted at the 2-position by a carbamate functional group (methyl N-(1H-benzimidazol-2-yl)carbamate). X-ray crystallographic analysis reveals a nearly planar molecular geometry with dihedral angles between the benzimidazole plane and carbamate group measuring less than 10°. The benzimidazole system itself exhibits bond lengths characteristic of aromatic heterocycles: C-N bonds measure 1.32-1.38 Å while C-C bonds range from 1.38-1.42 Å, consistent with complete electron delocalization across the fused ring system. The carbamate moiety shows typical carbonyl bond length of 1.23 Å and C-O bond length of 1.36 Å, indicating partial double bond character. Molecular orbital calculations demonstrate highest occupied molecular orbital (HOMO) localization predominantly on the benzimidazole π-system, while the lowest unoccupied molecular orbital (LUMO) shows significant carbonyl character. This electronic distribution facilitates charge transfer transitions observed in ultraviolet spectroscopy. The molecular point group symmetry approximates Cs due to the near-planar arrangement and absence of perpendicular symmetry elements. Chemical Bonding and Intermolecular ForcesCovalent bonding in Carbendazim involves sp² hybridization at all ring atoms and the carbonyl carbon, with the carbamate nitrogen exhibiting partial sp² character due to resonance with the carbonyl group. The benzimidazole system displays aromatic character with 10 π-electrons delocalized across the fused ring system, satisfying Hückel's rule for aromaticity. Bond energy calculations indicate C-N bond strengths of approximately 305 kJ·mol⁻¹ and C=O bond energy of 749 kJ·mol⁻¹, consistent with typical carbamate compounds. Intermolecular forces in solid-state Carbendazim primarily involve N-H···O=C hydrogen bonding between the benzimidazole N-H and carbamate carbonyl oxygen, with typical H-bond distances of 1.9-2.1 Å. Additional stabilization arises from π-π stacking interactions between parallel benzimidazole rings with interplanar distances of 3.4-3.6 Å. The molecular dipole moment measures 4.8 Debye with directionality toward the carbamate oxygen atom. Crystallographic studies identify two predominant polymorphic forms with differences in hydrogen bonding networks but similar density and thermal stability. Physical PropertiesPhase Behavior and Thermodynamic PropertiesCarbendazim presents as a white to light gray crystalline powder under standard conditions with characteristic needle-like crystal habit. The compound exhibits a sharp melting point range of 302-307°C accompanied by decomposition, preventing accurate determination of boiling point. Thermal gravimetric analysis shows weight loss beginning at 302°C with complete decomposition by 350°C. The density of crystalline material measures 1.45 g·cm⁻³ at 20°C with negligible temperature dependence below 200°C. Differential scanning calorimetry reveals no solid-solid phase transitions below the decomposition temperature. The enthalpy of fusion is estimated at 35 kJ·mol⁻¹ based on comparative analysis with structurally similar benzimidazole compounds. Specific heat capacity measures 1.2 J·g⁻¹·K⁻¹ at 25°C with linear temperature dependence. The refractive index of crystalline material is 1.65 measured by immersion methods. Solubility parameters include water solubility of 8 mg·L⁻¹ at 25°C, with significantly higher solubility in polar organic solvents: 68 g·L⁻¹ in acetone, 28 g·L⁻¹ in methanol, and 4 g·L⁻¹ in hexane at the same temperature. Spectroscopic CharacteristicsInfrared spectroscopy of Carbendazim displays characteristic absorption bands at 3320 cm⁻¹ (N-H stretch), 1705 cm⁻¹ (C=O stretch), 1610 cm⁻¹ and 1530 cm⁻¹ (benzimidazole ring vibrations), and 1250 cm⁻¹ (C-O stretch). Proton nuclear magnetic resonance spectroscopy (¹H NMR, DMSO-d₆) shows signals at δ 12.05 ppm (broad singlet, 1H, benzimidazole N-H), δ 7.45 ppm (multiplet, 2H, aromatic H-5 and H-6), δ 7.15 ppm (multiplet, 2H, aromatic H-4 and H-7), and δ 3.75 ppm (singlet, 3H, methyl protons). Carbon-13 NMR exhibits signals at δ 155.2 ppm (carbamate carbonyl), δ 151.6 ppm and 142.3 ppm (benzimidazole C-2 and C-7a), δ 122.7 ppm, 119.8 ppm, and 115.4 ppm (aromatic CH carbons), and δ 52.1 ppm (methyl carbon). Ultraviolet-visible spectroscopy in methanol solution shows absorption maxima at 282 nm (ε = 18,500 M⁻¹·cm⁻¹) and 205 nm (ε = 29,000 M⁻¹·cm⁻¹) corresponding to π→π* transitions of the conjugated system. Mass spectrometric analysis displays molecular ion peak at m/z 191 with major fragmentation peaks at m/z 160 (loss of OCH₃), m/z 132 (benzimidazole fragment), and m/z 104 (protonated benzimidazole). Chemical Properties and ReactivityReaction Mechanisms and KineticsCarbendazim demonstrates moderate chemical stability under ambient conditions but undergoes hydrolysis under both acidic and basic conditions. Acid-catalyzed hydrolysis proceeds via protonation of the carbamate carbonyl oxygen followed by nucleophilic attack by water at the carbonyl carbon, yielding 2-aminobenzimidazole and methyl alcohol. The pseudo-first order rate constant for hydrolysis at pH 3.0 and 25°C measures 2.3 × 10⁻⁶ s⁻¹. Alkaline hydrolysis occurs through nucleophilic attack by hydroxide ion at the carbonyl carbon, following second-order kinetics with rate constant of 8.7 × 10⁻³ M⁻¹·s⁻¹ at pH 9.0 and 25°C. Thermal decomposition above 302°C proceeds primarily through cleavage of the carbamate linkage with subsequent decomposition of both fragments. The compound exhibits photochemical degradation under ultraviolet radiation with quantum yield of 0.12 in aqueous solution, involving homolytic cleavage of the N-C bond between the benzimidazole and carbamate groups. Oxidation with potassium permanganate or chromic acid attacks the benzimidazole ring system, leading to ring opening and formation of dicarboxylic acid derivatives. Acid-Base and Redox PropertiesCarbendazim functions as a weak acid with pKa value of 4.48 corresponding to deprotonation of the benzimidazole N-H group. Protonation occurs at the imidazole nitrogen with pKa of 3.12 for the conjugate acid, creating a zwitterionic species at intermediate pH values. The compound exhibits buffering capacity between pH 3.0 and 5.5 with maximum buffer intensity at pH 4.3. Redox properties include irreversible oxidation at +1.05 V versus standard hydrogen electrode corresponding to two-electron oxidation of the benzimidazole system. Cyclic voltammetry shows no reduction peaks within the accessible potential range in aqueous solutions, indicating stability toward reduction under normal conditions. The compound demonstrates stability in neutral and weakly acidic conditions but undergoes rapid degradation in strongly alkaline environments. No significant complexation behavior with metal ions is observed except weak interaction with copper(II) ions at high concentrations. Synthesis and Preparation MethodsLaboratory Synthesis RoutesThe most efficient laboratory synthesis of Carbendazim involves the reaction of o-phenylenediamine with methyl cyanate in acidic medium. This one-pot synthesis proceeds through initial formation of a urea intermediate followed by cyclization to the benzimidazole system. Typical reaction conditions employ hydrochloric acid catalysis in ethanol solvent at reflux temperature for 4-6 hours, yielding Carbendazim in 85-90% purity after recrystallization from dimethylformamide. An alternative route involves the reaction of 2-aminobenzimidazole with methyl chloroformate in the presence of base. This method employs triethylamine as acid scavenger in tetrahydrofuran solvent at 0-5°C, producing Carbendazim in 75-80% yield with minimal byproduct formation. Purification typically involves column chromatography on silica gel using ethyl acetate-hexane mixtures as eluent followed by recrystallization. The crystalline product obtained from either method exhibits identical spectroscopic characteristics and melting behavior, confirming formation of the same compound. Industrial Production MethodsIndustrial production of Carbendazim utilizes a two-step process starting from o-phenylenediamine and methyl carbamate. The first step involves formation of N-(2-aminophenyl)carbamic acid methyl ester through nucleophilic substitution, followed by thermal cyclization at 180-200°C to form the benzimidazole ring. This process achieves overall yields of 85-90% with minimal waste production. The reaction is typically conducted in continuous flow reactors with precise temperature control to minimize decomposition. Crude product purification involves dissolution in hot acetic acid followed by crystallization through cooling, yielding technical grade Carbendazim with purity exceeding 98%. Further purification for analytical standards employs recrystallization from dimethyl sulfoxide. Production facilities implement extensive solvent recovery systems to minimize environmental impact, with typical solvent recovery rates exceeding 95%. The process economics are dominated by raw material costs, particularly o-phenylenediamine, which accounts for approximately 65% of production expenses. Analytical Methods and CharacterizationIdentification and QuantificationStandard identification of Carbendazim employs thin-layer chromatography on silica gel GF₂₅₄ plates with toluene-ethyl acetate-formic acid (5:4:1) mobile phase, exhibiting Rf value of 0.45. High-performance liquid chromatography utilizing C₁₈ reverse-phase columns with UV detection at 280 nm provides quantitative analysis with detection limit of 0.01 mg·L⁻¹. Typical chromatographic conditions employ acetonitrile-water (45:55) mobile phase at flow rate of 1.0 mL·min⁻¹, yielding retention time of 6.3 minutes. Gas chromatographic analysis requires derivatization with N-methyl-N-(trimethylsilyl)trifluoroacetamide to form volatile trimethylsilyl derivatives, with detection limit of 0.05 mg·L⁻¹ using mass spectrometric detection. Fourier transform infrared spectroscopy provides confirmatory identification through comparison with reference spectra, particularly the carbonyl stretching vibration at 1705 cm⁻¹. Quantitative 1H NMR using dimethyl sulfone as internal standard offers absolute quantification with uncertainty of ±2%. Purity Assessment and Quality ControlPharmaceutical grade Carbendazim specifications require minimum purity of 99.0% by HPLC area normalization, with limits for related substances including 2-aminobenzimidazole (not more than 0.2%), methyl N-(2-aminophenyl)carbamate (not more than 0.3%), and any other individual impurity (not more than 0.1%). Residual solvent limits follow ICH guidelines: methanol (not more than 3000 ppm), acetone (not more than 5000 ppm), and dimethylformamide (not more than 880 ppm). Heavy metal content must not exceed 10 ppm as determined by atomic absorption spectroscopy. Loss on drying measures less than 0.5% after 2 hours at 105°C. Sulfated ash content remains below 0.1% after ignition at 800°C. Quality control protocols include stability testing under accelerated conditions (40°C and 75% relative humidity) for 6 months with specification limits of not more than 2.0% total impurities. The compound demonstrates excellent thermal stability with no significant degradation observed after 24 hours at 80°C. Applications and UsesIndustrial and Commercial ApplicationsCarbendazim serves primarily as a broad-spectrum systemic fungicide in agricultural applications, particularly for control of Ascomycetes, Deuteromycetes, and Basidiomycetes fungi. Commercial formulations include wettable powders containing 50% active ingredient, flowable concentrates with 40% active ingredient, and seed treatment formulations at 2-4% concentration. Application rates vary from 100-500 g active ingredient per hectare depending on crop and disease pressure. The compound demonstrates protective and curative action through inhibition of fungal cell division via binding to β-tubulin. Major crop applications include cereal grains (wheat, barley, rice), fruits (citrus, bananas, apples), and vegetables. Non-agricultural applications include use in timber preservation against wood-decaying fungi and in paint formulations as a fungicidal additive. Global market volume exceeds 20,000 metric tons annually, with predominant production in China, India, and Western European countries. The compound's stability, effectiveness, and relatively low mammalian toxicity contribute to its continued commercial significance despite regulatory restrictions in some jurisdictions. Research Applications and Emerging UsesResearch applications of Carbendazim focus primarily on its mechanism of action as a microtubule assembly inhibitor, serving as a reference compound in cell biology studies. The compound enables investigation of cell division processes in eukaryotic organisms through specific disruption of mitotic spindle formation. Recent studies explore Carbendazim derivatives as potential anticancer agents targeting rapidly dividing cells, though clinical applications remain investigational. Materials science research utilizes Carbendazim as a building block for supramolecular assemblies through its hydrogen bonding capability, creating molecular networks with potential applications in crystal engineering. Electrochemical studies employ Carbendazim as a model compound for investigating electron transfer mechanisms in heterocyclic systems. Emerging applications include use as a molecular template in molecularly imprinted polymers for selective recognition of benzimidazole compounds. Patent literature describes Carbendazim incorporation into polymer matrices for creating antimicrobial surfaces and coatings, though commercial implementation remains limited. Historical Development and DiscoveryCarbendazim emerged from systematic research into benzimidazole derivatives during the 1960s, initially investigated as metabolites of the broader benzimidazole fungicide class. Initial patent protection was granted in 1968 following discovery of its fungicidal activity independent of its parent compound benomyl. The compound's systemic properties and broad-spectrum activity prompted rapid commercial development throughout the 1970s, establishing it as a major agricultural fungicide. Structural characterization through X-ray crystallography in 1975 confirmed the molecular geometry and hydrogen bonding patterns that govern its physical properties. Mechanism of action studies throughout the 1980s elucidated its specific inhibition of fungal β-tubulin assembly, providing molecular-level understanding of its biological activity. Regulatory reviews beginning in the 1990s resulted in continued registration in most jurisdictions with revised application guidelines and safety protocols. Ongoing research focuses on environmental fate, degradation pathways, and development of analytical methods for residue detection. The compound's history exemplifies the transition from empirical discovery to mechanistic understanding in agricultural chemical development. ConclusionCarbendazim represents a chemically sophisticated benzimidazole carbamate compound with well-characterized structural, physical, and chemical properties. Its molecular architecture combines aromatic benzimidazole character with carbamate functionality, creating distinctive electronic properties that govern both its biological activity and chemical behavior. The compound exhibits moderate stability under environmental conditions with specific reactivity patterns toward hydrolysis and oxidation. Industrial production employs efficient synthetic routes that yield high-purity material suitable for agricultural applications. Analytical methods provide comprehensive characterization and quantification capabilities supporting both manufacturing quality control and environmental monitoring. While primarily significant as an agricultural fungicide, Carbendazim serves as a valuable research tool in cell biology and continues to inspire development of new derivatives with modified properties. Future research directions include investigation of its environmental degradation pathways, development of more selective derivatives, and exploration of non-agricultural applications in materials science and specialty chemicals. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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