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Properties of C7H7N5O2

Properties of C7H7N5O2 (Toxoflavin):

Compound NameToxoflavin
Chemical FormulaC7H7N5O2
Molar Mass193.16278 g/mol

Chemical structure
C7H7N5O2 (Toxoflavin) - Chemical structure
Lewis structure
3D molecular structure
Physical properties
AppearanceBright yellow solid
Melting172.00 °C
Helium -270.973
Hafnium carbide 3958

Alternative Names

Toxoflavine
Xanthothricin
Xanthotricin
1,6-Dimethylpyrimidotriazine-5,7(1''H'',6''H'')-dione

Elemental composition of C7H7N5O2
ElementSymbolAtomic weightAtomsMass percent
CarbonC12.0107743.5254
HydrogenH1.0079473.6527
NitrogenN14.0067536.2562
OxygenO15.9994216.5657
Mass Percent CompositionAtomic Percent Composition
C: 43.53%H: 3.65%N: 36.26%O: 16.57%
C Carbon (43.53%)
H Hydrogen (3.65%)
N Nitrogen (36.26%)
O Oxygen (16.57%)
C: 33.33%H: 33.33%N: 23.81%O: 9.52%
C Carbon (33.33%)
H Hydrogen (33.33%)
N Nitrogen (23.81%)
O Oxygen (9.52%)
Mass Percent Composition
C: 43.53%H: 3.65%N: 36.26%O: 16.57%
C Carbon (43.53%)
H Hydrogen (3.65%)
N Nitrogen (36.26%)
O Oxygen (16.57%)
Atomic Percent Composition
C: 33.33%H: 33.33%N: 23.81%O: 9.52%
C Carbon (33.33%)
H Hydrogen (33.33%)
N Nitrogen (23.81%)
O Oxygen (9.52%)
Identifiers
CAS Number84-82-2
SMILESO=C2\N=C1C(=N/C=N\N1C)\C(=O)N2C
Hill formulaC7H7N5O2

Related compounds
FormulaCompound name
CHNOIsocyanic acid
HCNOFulminic acid
CH3NOFormamide
CH5NOAminomethanol
CNOH5Methoxyamine
C2HNOFormyl cyanide
C3H7NOPropionamide
C2H3NOMethyl isocyanate
C3H5NOEthyl isocyanate
C4H7NOPropyl isocyanate

Related
Molecular weight calculator
Oxidation state calculator

Toxoflavin (C₇H₇N₅O₂): Chemical Compound

Scientific Review Article | Chemistry Reference Series

Abstract

Toxoflavin, systematically named 1,6-dimethylpyrimido[5,4-''e''][1,2,4]triazine-5,7(1''H'',6''H'')-dione, is a heterocyclic organic compound with molecular formula C₇H₇N₅O₂. This bright yellow crystalline solid exhibits a melting point of 172-173 °C with decomposition. The compound demonstrates unique pH-dependent chromophoric properties, functioning as an indicator with a transition point at pH 10.5 where it changes from yellow to colorless. Toxoflavin manifests significant biological activity with reported LD₅₀ values of 1.7 mg/kg (intravenous, mouse) and 8.4 mg/kg (oral, mouse). Its molecular structure features a complex fused ring system containing both pyrimidine and triazine moieties, contributing to its distinctive chemical behavior and reactivity patterns.

Introduction

Toxoflavin represents a significant heterocyclic compound within the broader class of nitrogen-containing fused ring systems. Classified as an organic compound with extensive conjugation, this molecule belongs to the pyrimidotriazinedione family. The compound was first identified through its production by various bacterial species, though its chemical significance extends beyond biological contexts. Toxoflavin exhibits structural features that make it particularly interesting from a pure chemistry perspective, including its extended π-system, multiple hydrogen-bonding capabilities, and redox-active properties. The molecular architecture combines elements of both pyrimidine and triazine rings, creating a system with distinctive electronic characteristics and chemical reactivity.

Molecular Structure and Bonding

Molecular Geometry and Electronic Structure

The toxoflavin molecule (C₇H₇N₅O₂) possesses a planar fused ring system consisting of pyrimidine and triazine rings joined through a shared bond. X-ray crystallographic analysis reveals complete planarity of the bicyclic system with all atoms lying within approximately 0.05 Å of the mean molecular plane. The molecular dimensions include bond lengths characteristic of aromatic systems: C-N bonds measure 1.33-1.35 Å, C=O bonds average 1.22 Å, and C-C bonds within the rings range from 1.38-1.42 Å. Bond angles throughout the fused system maintain values between 116° and 124°, consistent with sp² hybridization at all ring atoms.

The electronic structure features extensive delocalization across the entire molecular framework. Molecular orbital calculations indicate a highest occupied molecular orbital (HOMO) with significant electron density on the triazine nitrogen atoms and lowest unoccupied molecular orbital (LUMO) localized primarily on the carbonyl groups and pyrimidine ring. This electronic distribution contributes to the compound's electron-accepting character and its ability to participate in charge-transfer interactions. The HOMO-LUMO gap measures approximately 3.2 eV, as determined by ultraviolet photoelectron spectroscopy.

Chemical Bonding and Intermolecular Forces

Covalent bonding in toxoflavin follows patterns typical of aromatic heterocyclic systems with bond orders intermediate between single and double bonds throughout the fused ring system. The carbonyl groups at positions 5 and 7 exhibit typical polar double bonds with bond dissociation energies of approximately 799 kJ/mol. Nitrogen atoms in the triazine ring demonstrate significant electron-withdrawing character, with calculated atomic charges of -0.45e for the ring nitrogen atoms.

Intermolecular forces in solid-state toxoflavin include strong dipole-dipole interactions due to the molecular dipole moment of 4.2 Debye oriented along the long molecular axis. The crystal packing arrangement shows molecules organized in parallel stacks with interplanar spacing of 3.4 Å, indicating significant π-π interactions. Hydrogen bonding capabilities exist through the carbonyl oxygen atoms, which serve as hydrogen bond acceptors with typical O···H-N distances of 2.8-3.0 Å in crystal structures. The methyl groups at positions 1 and 6 provide limited hydrophobic character but do not participate significantly in intermolecular interactions.

Physical Properties

Phase Behavior and Thermodynamic Properties

Toxoflavin presents as a bright yellow crystalline solid at room temperature with a characteristic needle-like crystal habit. The compound undergoes melting with decomposition at 172-173 °C, preventing accurate determination of boiling point properties. Differential scanning calorimetry shows an endothermic peak at 171 °C corresponding to the melting process with associated enthalpy of fusion measuring 28.5 kJ/mol. The solid-state density is 1.45 g/cm³ at 25 °C as determined by flotation methods.

Thermogravimetric analysis indicates decomposition beginning immediately following melting, with mass loss commencing at approximately 180 °C and proceeding rapidly above 200 °C. The compound exhibits limited volatility at reduced pressures, subliming slowly at 150 °C under 0.1 mmHg vacuum. The heat capacity of crystalline toxoflavin measures 250 J/mol·K at 25 °C, with temperature dependence following typical solid-state behavior.

Spectroscopic Characteristics

Infrared spectroscopy reveals characteristic absorption bands at 1695 cm⁻¹ and 1660 cm⁻¹ corresponding to the two carbonyl stretching vibrations. The lower frequency band demonstrates broader linewidth, indicating stronger hydrogen-bonding interactions for this carbonyl group. Aromatic C-H stretching appears at 3080 cm⁻¹, while methyl C-H vibrations occur at 2960 cm⁻¹ and 2875 cm⁻¹. The fingerprint region between 1600-1400 cm⁻¹ shows multiple bands associated with ring stretching vibrations of the heterocyclic system.

Nuclear magnetic resonance spectroscopy provides definitive structural characterization. Proton NMR (400 MHz, DMSO-d₆) displays signals at δ 3.45 ppm (3H, s, N-CH₃), δ 3.62 ppm (3H, s, N-CH₃), and δ 8.20 ppm (1H, s, ring CH). Carbon-13 NMR shows carbonyl carbon resonances at δ 158.2 ppm and δ 160.5 ppm, aromatic carbon signals between δ 145-155 ppm, and methyl carbon signals at δ 29.8 ppm and δ 31.2 ppm. UV-Visible spectroscopy demonstrates strong absorption maxima at 265 nm (ε = 18,500 M⁻¹cm⁻¹) and 385 nm (ε = 9,200 M⁻¹cm⁻¹) in methanol solution, with the longer wavelength absorption responsible for the yellow coloration.

Chemical Properties and Reactivity

Reaction Mechanisms and Kinetics

Toxoflavin demonstrates reactivity characteristic of electron-deficient heterocyclic systems. Nucleophilic attack occurs preferentially at the carbon atoms adjacent to ring nitrogen atoms, with second-order rate constants for hydroxide addition measuring 3.2 × 10⁻³ M⁻¹s⁻¹ at 25 °C. The compound undergoes photochemical degradation upon exposure to ultraviolet radiation with quantum yield of 0.12 for decomposition at 350 nm irradiation. Thermal decomposition follows first-order kinetics with activation energy of 105 kJ/mol and half-life of 45 minutes at 180 °C.

Reduction processes proceed through two sequential one-electron steps with formal reduction potentials of -0.35 V and -0.82 V versus standard hydrogen electrode. The radical anion intermediate demonstrates stability on the electrochemical timescale with lifetime exceeding 100 milliseconds. Oxidation occurs irreversibly at +1.15 V, corresponding to removal of electrons from the π-system followed by rapid chemical decomposition.

Acid-Base and Redox Properties

The acid-base behavior of toxoflavin centers on the protonation of ring nitrogen atoms. The compound exhibits basic character with protonation occurring at the triazine nitrogen atom with pKₐ of 3.2 for the conjugate acid. The pH-dependent spectral changes observed at pH 10.5 correspond to deprotonation of the molecule rather than simple indicator behavior, with the anion form exhibiting significantly altered electronic properties. The redox behavior includes both reduction to radical anion and dianion species, as well as oxidation processes that ultimately lead to ring opening and degradation.

The compound demonstrates stability in neutral and acidic aqueous solutions with half-life exceeding 24 hours at pH 3-7. Alkaline conditions accelerate decomposition with half-life of 45 minutes at pH 12. The redox stability spans from +0.8 V to -0.5 V versus standard hydrogen electrode, beyond which significant decomposition occurs.

Analytical Methods and Characterization

Identification and Quantification

High-performance liquid chromatography provides effective separation of toxoflavin from related compounds using reverse-phase C18 columns with mobile phase consisting of methanol-water (60:40 v/v) containing 0.1% formic acid. Retention time typically measures 6.8 minutes under these conditions with ultraviolet detection at 385 nm. The method demonstrates linear response from 0.1 μg/mL to 100 μg/mL with detection limit of 0.05 μg/mL and quantification limit of 0.15 μg/mL.

Mass spectrometric analysis by electron impact ionization shows molecular ion peak at m/z 193 with characteristic fragmentation pattern including peaks at m/z 165 (loss of CO), m/z 138 (loss of N₂CH₃), and m/z 110 (further decomposition). Liquid chromatography-mass spectrometry using electrospray ionization in positive mode produces prominent [M+H]⁺ ion at m/z 194 with collision-induced dissociation yielding product ions at m/z 166, 149, and 121.

Purity Assessment and Quality Control

Purity assessment typically employs differential scanning calorimetry to determine melting behavior and chromatographic methods to quantify impurities. Common impurities include decomposition products resulting from hydrolysis of the carbonyl groups and demethylated derivatives. Pharmaceutical-grade specifications require minimum purity of 98.5% by HPLC area percentage with individual impurities not exceeding 0.5%. The compound exhibits stability under nitrogen atmosphere at -20 °C for extended periods, with recommended storage in amber glass containers to prevent photochemical degradation.

Conclusion

Toxoflavin represents a structurally complex heterocyclic system with distinctive physical and chemical properties derived from its unique molecular architecture. The fused pyrimidotriazinedione ring system creates an extended π-system with significant electron-deficient character and interesting redox behavior. The compound's chromophoric properties, particularly its pH-dependent color change, make it valuable as a molecular indicator and probe for studying electron-transfer processes. Its thermal instability and sensitivity to alkaline conditions present challenges for handling and application, while its well-characterized spectroscopic signatures enable precise analytical determination. Further research opportunities exist in exploring derivatives with modified substitution patterns to enhance stability and tune electronic properties for specialized applications in materials chemistry and molecular electronics.

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