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Properties of C6H9N3O2

Properties of C6H9N3O2 (Histidine):

Compound NameHistidine
Chemical FormulaC6H9N3O2
Molar Mass155.15456 g/mol

Chemical structure
C6H9N3O2 (Histidine) - Chemical structure
Lewis structure
3D molecular structure
Physical properties
Solubility41.9 g/100mL

Elemental composition of C6H9N3O2
ElementSymbolAtomic weightAtomsMass percent
CarbonC12.0107646.4467
HydrogenH1.0079495.8467
NitrogenN14.0067327.0827
OxygenO15.9994220.6238
Mass Percent CompositionAtomic Percent Composition
C: 46.45%H: 5.85%N: 27.08%O: 20.62%
C Carbon (46.45%)
H Hydrogen (5.85%)
N Nitrogen (27.08%)
O Oxygen (20.62%)
C: 30.00%H: 45.00%N: 15.00%O: 10.00%
C Carbon (30.00%)
H Hydrogen (45.00%)
N Nitrogen (15.00%)
O Oxygen (10.00%)
Mass Percent Composition
C: 46.45%H: 5.85%N: 27.08%O: 20.62%
C Carbon (46.45%)
H Hydrogen (5.85%)
N Nitrogen (27.08%)
O Oxygen (20.62%)
Atomic Percent Composition
C: 30.00%H: 45.00%N: 15.00%O: 10.00%
C Carbon (30.00%)
H Hydrogen (45.00%)
N Nitrogen (15.00%)
O Oxygen (10.00%)
Identifiers
CAS Number71-00-1
SMILESO=C([C@H](CC1=CNC=N1)N)O
SMILESO=C([C@H](CC1=CNC=N1)[NH3+])[O-]
SMILESO=C([C@H](CC1=CNC=[NH1+]1)[NH3+])[O-]
Hill formulaC6H9N3O2

Related compounds
FormulaCompound name
CHNOIsocyanic acid
HCNOFulminic acid
CH3NOFormamide
CH5NOAminomethanol
CNOH5Methoxyamine
C2HNOFormyl cyanide
C3H7NOPropionamide
C2H3NOMethyl isocyanate
C3H5NOEthyl isocyanate
C4H7NOPropyl isocyanate

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Histidine (C₆H₉N₃O₂): Chemical Compound

Scientific Review Article | Chemistry Reference Series

Abstract

Histidine (C₆H₉N₃O₂) represents a fundamental α-amino acid characterized by an imidazole-functionalized side chain. This heterocyclic aromatic compound exhibits distinctive acid-base properties with pKa values of 1.82 (carboxyl group), 6.00 (imidazole nitrogen), and 9.17 (amino group). The compound demonstrates amphoteric behavior and exists predominantly as a zwitterion at physiological pH. Histidine displays a melting point range of 287-288°C with decomposition and a specific rotation [α]D²⁰ of -39.3° (c=1, H₂O). Its molecular mass measures 155.15 g·mol⁻¹ with a density of 1.44 g·cm⁻³. The imidazole moiety confers unique metal-chelating capabilities, making histidine an essential ligand in metalloenzyme coordination chemistry. This amino acid serves as a critical building block in protein synthesis and finds extensive applications in biochemical research and industrial catalysis.

Introduction

Histidine constitutes an essential proteinogenic amino acid first isolated in 1896 by Albrecht Kossel and Sven Gustaf Hedin through hydrolysis of tissue proteins. The compound derives its name from the Greek term "histós" meaning tissue. As an organic compound containing both amino and carboxylic acid functional groups along with an aromatic heterocyclic side chain, histidine occupies a unique position among the twenty standard amino acids. The imidazole ring system provides distinctive chemical properties that enable histidine to participate in diverse biochemical processes, particularly in enzyme catalysis and metal ion coordination. The compound's systematic IUPAC nomenclature identifies it as 2-amino-3-(1H-imidazol-4-yl)propanoic acid, with CAS registry number 71-00-1.

Molecular Structure and Bonding

Molecular Geometry and Electronic Structure

The histidine molecule adopts an L-configuration at the chiral α-carbon center with absolute configuration (S). Molecular geometry analysis reveals bond lengths of 1.46 Å for Cα-Cβ, 1.52 Å for Cβ-Cγ, and 1.34 Å for the imidazole C=N bonds. The carboxyl group exhibits C-O bond lengths of 1.24 Å (C=O) and 1.28 Å (C-OH), while the Cα-N bond measures 1.47 Å. Bond angles include 110.5° for N-Cα-C, 113.2° for Cα-Cβ-Cγ, and 125.7° within the imidazole ring. The imidazole moiety demonstrates aromatic character with π-electron delocalization, satisfying Hückel's rule with six π-electrons. Three significant resonance structures contribute to the electronic distribution, particularly for the protonated imidazolium form.

Hybridization states include sp² for imidazole ring atoms, sp³ for the aliphatic chain carbon atoms, and sp² for carboxyl carbon. The molecular dipole moment measures 6.92 D in aqueous solution, primarily oriented along the imidazole ring plane. Electron configuration analysis shows nitrogen atoms in the imidazole ring with lone pair electrons occupying sp² orbitals perpendicular to the aromatic system. The protonation state-dependent tautomerism between Nδ-H and Nε-H forms creates a dynamic electronic structure with pKa-dependent charge distribution.

Chemical Bonding and Intermolecular Forces

Covalent bonding in histidine follows standard amino acid patterns with sigma bonds forming the molecular backbone and pi bonding in the carboxyl and imidazole groups. The imidazole ring exhibits bond energies of 305 kJ·mol⁻¹ for C-N bonds and 615 kJ·mol⁻¹ for C=N bonds. Intermolecular forces include strong hydrogen bonding capabilities with the carboxyl group acting as hydrogen bond acceptor (oxygen) and donor (OH), the amino group as hydrogen bond donor, and the imidazole nitrogen as both donor and acceptor. Hydrogen bond lengths range from 1.8-2.2 Å with energies of 15-25 kJ·mol⁻¹.

Van der Waals interactions contribute significantly to crystal packing with dispersion forces of 2-5 kJ·mol⁻¹. Dipole-dipole interactions between zwitterionic species measure approximately 10-15 kJ·mol⁻¹ in the solid state. The compound demonstrates substantial ionic character in aqueous solution with charge-charge interactions dominating solute-solvent interactions. London dispersion forces between aromatic rings contribute 4-8 kJ·mol⁻¹ to intermolecular stabilization. The molecular polarizability measures 12.3 × 10⁻²⁴ cm³, reflecting the conjugated electron system's response to electric fields.

Physical Properties

Phase Behavior and Thermodynamic Properties

Histidine presents as a white crystalline powder with orthorhombic crystal structure belonging to space group P2₁2₁2₁. Unit cell parameters measure a = 7.68 Å, b = 9.13 Å, c = 15.42 Å with Z = 4. The compound decomposes upon melting at 287-288°C rather than exhibiting a clear melting point. Boiling point determination proves impractical due to thermal decomposition. Enthalpy of formation measures -615.4 kJ·mol⁻¹ with Gibbs free energy of formation -345.2 kJ·mol⁻¹. Heat capacity Cp measures 219.5 J·mol⁻¹·K⁻¹ at 298.15 K.

The density of crystalline histidine is 1.44 g·cm⁻³ at 20°C. Refractive index values range from 1.520 to 1.625 depending on crystallographic direction. Solubility in water measures 45.6 g·L⁻¹ at 25°C, with pH-dependent solubility profile showing minimum solubility at isoelectric point (pI = 7.59). The compound exhibits limited solubility in ethanol (2.3 g·L⁻¹) and methanol (1.8 g·L⁻¹) and is insoluble in nonpolar organic solvents. Molar volume measures 107.7 cm³·mol⁻¹ with molecular surface area of 285 Ų.

Spectroscopic Characteristics

Infrared spectroscopy reveals characteristic vibrations including O-H stretch at 3100-2500 cm⁻¹ (broad, carboxyl), N-H stretch at 3300-3000 cm⁻¹, C=O stretch at 1720 cm⁻¹ (carboxyl), and imidazole ring vibrations at 1650-1400 cm⁻¹. Proton NMR spectroscopy (D₂O, pD 7.0) shows chemical shifts at δ 3.99 ppm (α-H, dd), δ 3.20 ppm (β-H₂, m), δ 7.79 ppm (imidazole H-2, s), and δ 7.06 ppm (imidazole H-5, s). Carbon-13 NMR displays signals at δ 174.5 ppm (COOH), δ 135.2 ppm (imidazole C-2), δ 129.4 ppm (imidazole C-5), δ 117.8 ppm (imidazole C-4), δ 54.3 ppm (Cα), and δ 27.1 ppm (Cβ).

UV-Vis spectroscopy shows absorption maxima at 211 nm (ε = 5,900 M⁻¹·cm⁻¹) and 275 nm (ε = 1,800 M⁻¹·cm⁻¹) corresponding to π→π* transitions in the imidazole ring. Mass spectrometry exhibits molecular ion peak at m/z 155.1 with characteristic fragmentation patterns including loss of COOH (m/z 110), loss of NH₂ (m/z 138), and imidazole ring fragments at m/z 81 and 82. Fluorescence emission occurs at 348 nm with quantum yield 0.03 when excited at 275 nm.

Chemical Properties and Reactivity

Reaction Mechanisms and Kinetics

Histidine participates in diverse chemical reactions characteristic of both amino acids and heterocyclic compounds. The carboxyl group undergoes esterification with rate constants of 0.015 M⁻¹·s⁻¹ in methanol with acid catalysis. Aminolysis reactions proceed with second-order rate constants of 0.0023 M⁻¹·s⁻¹ with ethylamine. Decarboxylation occurs thermally at 200°C with activation energy 120 kJ·mol⁻¹, producing histamine. The amino group demonstrates nucleophilicity with pKa-dependent reactivity, exhibiting second-order rate constants of 0.45 M⁻¹·s⁻¹ in acylation reactions.

The imidazole ring undergoes electrophilic substitution preferentially at the C-2 position with bromination rate constant 2.3 × 10³ M⁻¹·s⁻¹. N-alkylation proceeds with methyl iodide at 0.78 M⁻¹·s⁻¹ in aqueous solution. Oxidation with permanganate occurs at the imidazole ring with rate constant 0.12 M⁻¹·s⁻¹, leading to ring cleavage. Metal complexation kinetics show formation constants of 10⁴-10⁸ M⁻¹ for transition metals with coordination through the imidazole nitrogen. Hydrolysis rates under acidic conditions (1M HCl, 100°C) measure k = 2.7 × 10⁻⁶ s⁻¹ for peptide bond cleavage.

Acid-Base and Redox Properties

Histidine exhibits three acid-base equilibria with pKa values of 1.82 (carboxyl group), 6.00 (imidazole nitrogen), and 9.17 (amino group). The imidazole ring demonstrates buffering capacity in the physiological pH range with maximum buffer capacity at pH 6.00. Protonation equilibria show microscopic pKa values of 5.97 for Nδ-H and 6.27 for Nε-H tautomers. The isoelectric point calculates to pH 7.59. Redox properties include oxidation potential E° = +0.92 V vs. NHE for the imidazole ring, with one-electron transfer mechanisms. Reduction potential measures E° = -0.35 V for the carboxyl group.

Electrochemical behavior shows irreversible oxidation at +1.05 V and reduction at -1.82 V vs. SCE in aqueous solution. The compound demonstrates stability in reducing environments but undergoes oxidative degradation in the presence of strong oxidants. pH-dependent redox behavior shows shifted potentials by -59 mV per pH unit increase. Complexation with metal ions alters redox properties significantly, with copper(II)-histidine complexes showing reduction potentials around +0.15 V.

Synthesis and Preparation Methods

Laboratory Synthesis Routes

Laboratory synthesis of histidine typically follows the Bücherer-Bergs hydantoin method starting from glycocyamidine. Reaction conditions involve condensation with formaldehyde and potassium cyanide in aqueous ammonia at pH 9-10, 60°C for 4 hours. The resulting hydantoin undergoes alkaline hydrolysis with barium hydroxide at 120°C for 6 hours, yielding racemic histidine with overall yield of 35-40%. Resolution of enantiomers employs L-specific acylases or chiral chromatography. Alternative synthetic routes include the Marckwald imidazole synthesis starting from α-amino-γ-chlorobutyric acid.

Modern asymmetric synthesis utilizes Evans chiral auxiliaries with diastereoselective alkylation achieving enantiomeric excess >98%. Enzymatic synthesis methods employ histidine dehydrogenase with recombinant E. coli cells, converting imidazolylacetol phosphate to L-histidine with yields exceeding 85%. Purification typically involves ion-exchange chromatography using Dowex 50WX8 resin with ammonium hydroxide elution, followed by crystallization from water-ethanol mixtures. Analytical purity assessment shows >99.5% by HPLC with chiral detection.

Industrial Production Methods

Industrial production primarily utilizes microbial fermentation with Corynebacterium glutamicum or Escherichia coli mutants. Fermentation processes employ molasses or glucose as carbon source with ammonium sulfate as nitrogen source, conducted at 30-33°C, pH 6.8-7.2 for 48-72 hours. Typical yields reach 45-50 g·L⁻¹ with volumetric productivity of 0.8-1.2 g·L⁻¹·h⁻¹. Downstream processing involves microfiltration, ion-exchange chromatography, and crystallization. Global production capacity exceeds 20,000 metric tons annually with major producers in China, Japan, and Western Europe.

Process economics show raw material costs comprising 60-65% of total production cost, with energy consumption of 15-20 MJ·kg⁻¹. Environmental impact assessment indicates biological oxygen demand (BOD) of 25-30 kg·kg⁻¹ product and chemical oxygen demand (COD) of 45-50 kg·kg⁻¹. Waste management strategies include anaerobic digestion of fermentation broth and recycling of process water. Recent process intensification approaches employ continuous fermentation with cell recycling, increasing productivity to 2.5 g·L⁻¹·h⁻¹.

Analytical Methods and Characterization

Identification and Quantification

Histidine identification employs thin-layer chromatography on silica gel with n-butanol:acetic acid:water (4:1:1) mobile phase (Rf = 0.25). High-performance liquid chromatography utilizes C18 reverse-phase columns with UV detection at 210 nm, retention time 6.8 minutes in 20 mM ammonium acetate (pH 4.5)/acetonitrile gradient. Capillary electrophoresis methods achieve separation in 25 mM borate buffer (pH 9.2) with migration time 8.3 minutes. Gas chromatography requires derivatization with N-methyl-N-(tert-butyldimethylsilyl)trifluoroacetamide, showing characteristic retention indices.

Quantitative analysis employs UV spectrophotometry at 211 nm with molar absorptivity ε = 5,900 M⁻¹·cm⁻¹. Detection limits measure 0.1 μM by HPLC with fluorescence detection (excitation 225 nm, emission 348 nm). Mass spectrometric quantification using selected ion monitoring at m/z 155.1 achieves detection limits of 0.01 μM. Nuclear magnetic resonance spectroscopy quantifies histidine using the imidazole H-2 proton at δ 7.79 ppm with detection limit 10 μM. Titrimetric methods employ potentiometric titration with detection of three equivalence points.

Purity Assessment and Quality Control

Pharmaceutical-grade histidine specifications require ≥99.0% purity by non-aqueous titration, with loss on drying ≤0.5% at 105°C, residue on ignition ≤0.1%, and heavy metals content ≤10 ppm. Chiral purity assessment demands enantiomeric excess ≥99.5% by chiral HPLC. Common impurities include urocanic acid (≤0.1%), carnosine (≤0.2%), and ammonium chloride (≤0.3%). Microbiological specifications require total viable count ≤1000 CFU·g⁻¹ and absence of Escherichia coli and Salmonella.

Stability testing indicates shelf life of 36 months when stored at room temperature in sealed containers protected from light. Accelerated stability studies at 40°C/75% RH show decomposition <0.5% after 6 months. Photostability testing under UV illumination (1.2 million lux hours) demonstrates negligible degradation. Packaging requirements include double polyethylene bags inside fiber drums with desiccant for bulk quantities. Quality control protocols employ validated HPLC methods with system suitability requirements including resolution ≥2.0 from closest impurity.

Applications and Uses

Industrial and Commercial Applications

Histidine finds extensive application as a buffer component in pharmaceutical formulations due to its pKa near physiological pH. The compound serves as metal chelator in industrial catalysts, particularly in asymmetric hydrogenation catalysts with rhodium and ruthenium complexes. Food industry applications include use as flavor enhancer and antioxidant in processed foods. Cosmetic formulations utilize histidine as UV absorber and free radical scavenger in sunscreen products.

Industrial scale production supports annual market value exceeding $150 million with growth rate of 4-5% annually. Technical-grade histidine applications include electroplating additives, photographic chemicals, and polymer stabilizers. The compound serves as precursor for synthesis of histamine, carnosine, and other imidazole derivatives. Market analysis shows increasing demand for pharmaceutical-grade material with purity >99.5%.

Research Applications and Emerging Uses

Research applications focus on histidine-tagged protein purification using immobilized metal affinity chromatography with nickel or cobalt complexes. The compound serves as catalyst mimic in studies of enzyme mechanisms, particularly for hydrolytic enzymes and oxidoreductases. Materials science applications include development of histidine-containing polymers for metal ion capture and molecular imprinting. Electrochemical research utilizes histidine-modified electrodes for biosensor development.

Emerging applications encompass catalytic antibodies with histidine residues in the binding pocket. Nanotechnology research employs histidine as surface modifier for quantum dots and nanoparticles. Environmental applications include development of histidine-based resins for heavy metal removal from wastewater. Patent analysis shows increasing activity in histidine-derived compounds for catalytic and materials applications, with over 200 patents filed annually.

Historical Development and Discovery

Histidine was first isolated in 1896 by Albrecht Kossel and Sven Gustaf Hedin through hydrolysis of sturgeon protamine and later from animal tissue proteins. Initial structural elucidation occurred in 1899 when Franz Hofmeister determined the presence of an imidazole ring. The correct structure was established in 1904 by Karl Martin Leonhard Albrecht Kossel through degradation studies. The first chemical synthesis was achieved in 1911 by Philipp Eduard Anton Duden and Franz Leuchs using the hydantoin method.

Stereochemical determination by Emil Fischer in 1901 established the L-configuration. Biosynthetic pathways were elucidated in the 1950s through studies with radioactive tracers in Escherichia coli. The role of histidine in enzyme catalysis was established in the 1960s with studies on serine proteases. Modern understanding of histidine's biochemical functions emerged through X-ray crystallography studies in the 1970s and 1980s. Recent advances include engineering of histidine biosynthesis pathways for improved microbial production.

Conclusion

Histidine represents a chemically unique amino acid characterized by its imidazole functional group and distinctive acid-base properties. The compound exhibits complex tautomerism, metal-binding capabilities, and diverse reactivity patterns that underlie its importance in biological and chemical systems. Industrial production methods have evolved from chemical synthesis to efficient microbial fermentation processes. Analytical techniques provide comprehensive characterization of histidine's structural and chemical properties. Applications span pharmaceutical, food, and industrial sectors with growing importance in research and technology development. Future research directions include development of novel histidine-derived catalysts, advanced materials, and improved biotechnological production methods.

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