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Properties of C6H6N2O2

Properties of C6H6N2O2 (Urocanic acid):

Compound NameUrocanic acid
Chemical FormulaC6H6N2O2
Molar Mass138.12404 g/mol

Chemical structure
C6H6N2O2 (Urocanic acid) - Chemical structure
Lewis structure
3D molecular structure
Physical properties
Melting225.00 °C
Helium -270.973
Hafnium carbide 3958

Alternative Names

(''E'')-3-(1''H''-imidazol-4-yl)acrylic acid

Elemental composition of C6H6N2O2
ElementSymbolAtomic weightAtomsMass percent
CarbonC12.0107652.1735
HydrogenH1.0079464.3784
NitrogenN14.0067220.2813
OxygenO15.9994223.1667
Mass Percent CompositionAtomic Percent Composition
C: 52.17%H: 4.38%N: 20.28%O: 23.17%
C Carbon (52.17%)
H Hydrogen (4.38%)
N Nitrogen (20.28%)
O Oxygen (23.17%)
C: 37.50%H: 37.50%N: 12.50%O: 12.50%
C Carbon (37.50%)
H Hydrogen (37.50%)
N Nitrogen (12.50%)
O Oxygen (12.50%)
Mass Percent Composition
C: 52.17%H: 4.38%N: 20.28%O: 23.17%
C Carbon (52.17%)
H Hydrogen (4.38%)
N Nitrogen (20.28%)
O Oxygen (23.17%)
Atomic Percent Composition
C: 37.50%H: 37.50%N: 12.50%O: 12.50%
C Carbon (37.50%)
H Hydrogen (37.50%)
N Nitrogen (12.50%)
O Oxygen (12.50%)
Identifiers
CAS Number104-98-3
SMILESc1c(nc[nH]1)/C=C/C(=O)O
Hill formulaC6H6N2O2

Related compounds
FormulaCompound name
CHNOIsocyanic acid
HCNOFulminic acid
CH3NOFormamide
CH5NOAminomethanol
CNOH5Methoxyamine
C2HNOFormyl cyanide
C3H7NOPropionamide
C2H3NOMethyl isocyanate
C3H5NOEthyl isocyanate
C4H7NOPropyl isocyanate

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Urocanic Acid (C6H6N2O2): Chemical Compound

Scientific Review Article | Chemistry Reference Series

Abstract

Urocanic acid, systematically named (2E)-3-(1H-imidazol-4-yl)prop-2-enoic acid, is an unsaturated carboxylic acid with molecular formula C6H6N2O2 and molar mass 138.124 g/mol. This heterocyclic compound exists predominantly as the trans-isomer under standard conditions, characterized by a crystalline solid state with a melting point of 225°C. The molecule contains an α,β-unsaturated carboxylic acid functionality conjugated with an imidazole ring system, resulting in distinctive electronic properties and reactivity patterns. Urocanic acid demonstrates significant photochemical behavior, undergoing trans-to-cis isomerization upon ultraviolet irradiation. Its acid-base properties include two ionizable groups with pKa values of approximately 3.5 for the carboxylic acid and 6.5 for the imidazolium nitrogen. The compound serves as an important intermediate in chemical synthesis and exhibits unique spectroscopic characteristics valuable for analytical identification.

Introduction

Urocanic acid represents a biologically derived organic compound belonging to the class of imidazole-containing unsaturated carboxylic acids. First isolated in 1874 by Max Jaffé from canine urine, the compound derives its name from the Latin words "urina" (urine) and "canis" (dog). This heterocyclic molecule possesses significant chemical interest due to its conjugated system combining an electron-deficient imidazole ring with an α,β-unsaturated carboxylic acid functionality. The compound exists in two isomeric forms, with the trans configuration predominating under ambient conditions. Urocanic acid serves as a model compound for studying photoisomerization processes and electronic conjugation in heterocyclic systems. Its chemical behavior reflects the interplay between the acidic imidazole nitrogen, the carboxylic acid group, and the conjugated π-electron system, resulting in unique reactivity patterns distinct from simpler aromatic carboxylic acids.

Molecular Structure and Bonding

Molecular Geometry and Electronic Structure

The molecular structure of trans-urocanic acid features a planar configuration with the imidazole ring and propenoic acid side chain lying in approximately the same plane. X-ray crystallographic analysis reveals bond lengths of 1.35 Å for the C=C double bond and 1.23 Å for the carbonyl C=O bond, consistent with typical conjugated systems. The imidazole ring exhibits bond lengths of 1.37 Å for C=N bonds and 1.32 Å for C-N bonds, characteristic of aromatic heterocycles. Bond angles at the vinyl carbon atoms measure approximately 120°, indicating sp2 hybridization. The dihedral angle between the imidazole ring and the acrylic acid moiety measures less than 10°, demonstrating effective π-electron conjugation throughout the molecular framework.

Electronic structure calculations using density functional theory indicate highest occupied molecular orbitals localized primarily on the imidazole ring and the double bond system, while the lowest unoccupied molecular orbitals show greater electron density on the carboxylic acid group. The HOMO-LUMO gap calculates to approximately 5.2 eV, consistent with the compound's UV absorption characteristics. Natural bond orbital analysis reveals significant electron delocalization between the imidazole nitrogen atoms and the conjugated double bond system, contributing to the molecule's stability and electronic properties.

Chemical Bonding and Intermolecular Forces

Urocanic acid exhibits strong intramolecular hydrogen bonding potential between the carboxylic acid hydrogen and the imidazole nitrogen atoms, with computed bond distances of approximately 1.85 Å. Intermolecular forces in the crystalline state include conventional hydrogen bonding between carboxylic acid dimers with O···O distances of 2.65 Å, as well as N-H···O hydrogen bonds between imidazole nitrogen and carbonyl oxygen atoms with N···O distances of 2.89 Å. The molecule possesses a calculated dipole moment of 4.8 Debye in the gas phase, oriented along the long molecular axis from the imidazole ring toward the carboxylic acid group.

Van der Waals interactions contribute significantly to crystal packing, with closest carbon-carbon contacts measuring 3.4 Å. The compound's solubility behavior in various solvents indicates strong hydrogen bonding capacity, with highest solubility observed in polar protic solvents such as water and methanol. The calculated octanol-water partition coefficient (log P) of -0.85 reflects the compound's hydrophilic character resulting from its ionizable groups and hydrogen bonding capacity.

Physical Properties

Phase Behavior and Thermodynamic Properties

Urocanic acid presents as a white crystalline solid at room temperature with a characteristic melting point of 225°C. The compound undergoes decomposition rather than boiling at atmospheric pressure, with thermal degradation commencing above 250°C. Differential scanning calorimetry shows a sharp endothermic peak at the melting point with enthalpy of fusion measuring 28.5 kJ/mol. The crystalline density determined by X-ray diffraction is 1.45 g/cm3 at 25°C.

Solubility measurements indicate moderate water solubility of 12.4 g/L at 25°C, increasing to 38.6 g/L at 80°C. The compound exhibits pH-dependent solubility with maximum solubility observed at neutral pH values where both functional groups exist in ionized form. In organic solvents, solubility follows the order: water > methanol > ethanol > acetone > ethyl acetate > chloroform > hexane. The specific heat capacity of solid urocanic acid measures 1.2 J/g·K at 25°C.

Spectroscopic Characteristics

Infrared spectroscopy reveals characteristic absorption bands at 1695 cm-1 (C=O stretch), 1650 cm-1 (C=C stretch), 1550 cm-1 (imidazole ring vibrations), and 2500-3300 cm-1 (broad O-H stretch). The absence of sharp O-H stretching vibrations above 3000 cm-1 indicates strong hydrogen bonding in the solid state.

Nuclear magnetic resonance spectroscopy shows distinctive proton signals: the vinyl proton appears as a doublet at δ 6.35 ppm (J = 15.8 Hz), the β-vinyl proton as a double doublet at δ 7.55 ppm, and imidazole protons at δ 7.05 and 7.85 ppm in deuterated water. Carbon-13 NMR signals include the carbonyl carbon at δ 172.5 ppm, vinyl carbons at δ 118.2 and 142.5 ppm, and imidazole carbons at δ 120.3, 135.6, and 138.2 ppm.

UV-Vis spectroscopy demonstrates strong absorption maxima at 210 nm (π→π* transition) and 270 nm (n→π* transition) in aqueous solution, with molar extinction coefficients of 12,400 M-1cm-1 and 8,700 M-1cm-1 respectively. Mass spectrometric analysis shows a molecular ion peak at m/z 138 with major fragmentation peaks at m/z 120 (loss of H2O), m/z 94 (imidazole ring), and m/z 66 (protonated imidazole).

Chemical Properties and Reactivity

Reaction Mechanisms and Kinetics

Urocanic acid undergoes characteristic reactions of both α,β-unsaturated carboxylic acids and heterocyclic aromatic compounds. The conjugated system participates in Michael addition reactions at the β-carbon position with second-order rate constants of approximately 0.15 M-1s-1 for nucleophiles such as thiols and amines. The carboxylic acid group demonstrates typical esterification and amidation reactivity with conversion rates comparable to other acrylic acid derivatives.

Photochemical isomerization represents a particularly significant reaction pathway, with quantum yields of 0.45 for trans-to-cis conversion and 0.38 for cis-to-trans conversion upon irradiation at 280 nm. The photoswitching behavior follows first-order kinetics with rate constants of 1.2×10-3 s-1 for the forward reaction and 8.7×10-4 s-1 for the reverse reaction in aqueous solution at 25°C. Thermal isomerization occurs slowly with activation energy barriers of 105 kJ/mol for both directions.

Acid-Base and Redox Properties

Urocanic acid functions as a diprotic acid with two ionizable groups. The carboxylic acid group exhibits pKa = 3.45 while the imidazolium nitrogen protonates with pKa = 6.52 in aqueous solution at 25°C. The compound demonstrates buffering capacity in the physiological pH range with maximum buffer intensity at pH values corresponding to the two pKa values. Potentiometric titration shows well-defined inflection points at equivalent points corresponding to single and double deprotonation.

Electrochemical studies reveal irreversible oxidation waves at +0.95 V and +1.25 V versus standard hydrogen electrode, corresponding to oxidation of the imidazole ring and the double bond system respectively. Reduction occurs at -1.15 V with partial reversibility, attributed to reduction of the conjugated system. The compound exhibits stability in reducing environments but undergoes gradual decomposition under strongly oxidizing conditions.

Synthesis and Preparation Methods

Laboratory Synthesis Routes

The most efficient laboratory synthesis of urocanic acid employs enzymatic deamination of L-histidine using histidine ammonia-lyase (EC 4.3.1.3), yielding the trans-isomer exclusively with conversions exceeding 95% under optimized conditions. Typical reaction conditions involve 50 mM histidine solution in phosphate buffer (pH 7.5) with enzyme loading of 5 U/mL at 37°C for 24 hours. Purification proceeds via acid precipitation followed by recrystallization from hot water, providing chemical purity greater than 99% as determined by HPLC analysis.

Chemical synthesis routes include the condensation of imidazole-4-carboxaldehyde with malonic acid in pyridine solution under Knoevenagel conditions, yielding approximately 65% after recrystallization. Alternative approaches involve Wittig reactions with imidazole-4-carbaldehyde using phosphoranes derived from ethyl bromoacetate, followed by saponification of the ester intermediate. These chemical methods typically produce mixtures of trans and cis isomers requiring chromatographic separation.

Analytical Methods and Characterization

Identification and Quantification

High-performance liquid chromatography with UV detection at 270 nm provides the primary method for quantification of urocanic acid, using reverse-phase C18 columns with mobile phases consisting of aqueous phosphoric acid (0.1%) and acetonitrile in gradient elution mode. Retention times typically range from 8.5 to 9.5 minutes under standard conditions. The method demonstrates linear response from 0.1 μg/mL to 100 μg/mL with detection limits of 0.05 μg/mL and quantification limits of 0.15 μg/mL.

Capillary electrophoresis with UV detection offers an alternative separation method with higher resolution for isomer separation, employing borate buffers at pH 9.0 with applied voltages of 25 kV. This technique successfully resolves trans and cis isomers with baseline separation and migration times of 5.2 and 5.8 minutes respectively. Mass spectrometric detection using electrospray ionization in negative mode provides characteristic fragment patterns for confirmatory identification.

Applications and Uses

Industrial and Commercial Applications

Urocanic acid serves as a specialty chemical intermediate in the synthesis of more complex heterocyclic compounds, particularly those containing both imidazole and carboxylic acid functionalities. The compound's photoisomerization properties find application in molecular switching devices and photoresponsive materials research. Industrial scale production remains limited to specialty chemical manufacturers with estimated global production of 5-10 metric tons annually.

The compound's UV-absorbing characteristics suggest potential applications as a natural UV filter in cosmetic formulations, though commercial utilization remains limited due to regulatory considerations. Research applications include use as a model compound for studying electronic conjugation in heteroaromatic systems and as a building block for molecular electronics research. The compound's chirality upon incorporation into larger structures makes it valuable for asymmetric synthesis applications.

Historical Development and Discovery

Max Jaffé's initial isolation of urocanic acid in 1874 from canine urine represented the first identification of this unusual heterocyclic acid. Structural elucidation proceeded gradually over the subsequent decades, with the imidazole ring structure confirmed in 1911 through chemical degradation studies. The trans configuration of the naturally occurring isomer was established in 1938 using ultraviolet spectroscopy and chemical correlation methods.

Significant advances in understanding the compound's chemical properties emerged during the 1950s with the development of modern spectroscopic techniques. NMR studies in the 1960s provided definitive proof of the molecular structure and configuration. The photoisomerization behavior was systematically investigated throughout the 1970s using increasingly sophisticated laser techniques, leading to detailed mechanistic understanding of the excited state processes. Synthetic methodologies have evolved from early chemical approaches to modern enzymatic processes providing higher yields and isomeric purity.

Conclusion

Urocanic acid represents a chemically interesting compound combining features of heterocyclic aromatic systems with α,β-unsaturated carboxylic acid functionality. Its molecular structure exhibits extensive π-electron conjugation resulting in unique electronic properties and photochemical behavior. The compound serves as a valuable model system for studying conjugation effects in heteroaromatic compounds and photoisomerization processes. Current research focuses on applications in molecular electronics, photoresponsive materials, and as a building block for complex heterocyclic synthesis. Further investigation of its electrochemical properties and coordination chemistry may reveal additional applications in materials science and catalysis.

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