Printed from https://www.webqc.org

Properties of C5H7NOS

Properties of C5H7NOS (Penam):

Compound NamePenam
Chemical FormulaC5H7NOS
Molar Mass129.18018 g/mol

Chemical structure
C5H7NOS (Penam) - Chemical structure
Lewis structure
3D molecular structure

Elemental composition of C5H7NOS
ElementSymbolAtomic weightAtomsMass percent
CarbonC12.0107546.4882
HydrogenH1.0079475.4618
NitrogenN14.0067110.8428
OxygenO15.9994112.3853
SulfurS32.065124.8219
Mass Percent CompositionAtomic Percent Composition
C: 46.49%H: 5.46%N: 10.84%O: 12.39%S: 24.82%
C Carbon (46.49%)
H Hydrogen (5.46%)
N Nitrogen (10.84%)
O Oxygen (12.39%)
S Sulfur (24.82%)
C: 33.33%H: 46.67%N: 6.67%O: 6.67%S: 6.67%
C Carbon (33.33%)
H Hydrogen (46.67%)
N Nitrogen (6.67%)
O Oxygen (6.67%)
S Sulfur (6.67%)
Mass Percent Composition
C: 46.49%H: 5.46%N: 10.84%O: 12.39%S: 24.82%
C Carbon (46.49%)
H Hydrogen (5.46%)
N Nitrogen (10.84%)
O Oxygen (12.39%)
S Sulfur (24.82%)
Atomic Percent Composition
C: 33.33%H: 46.67%N: 6.67%O: 6.67%S: 6.67%
C Carbon (33.33%)
H Hydrogen (46.67%)
N Nitrogen (6.67%)
O Oxygen (6.67%)
S Sulfur (6.67%)
Identifiers
CAS Number53908-04-6
SMILESC1CSC2N1C(=O)C2
Hill formulaC5H7NOS

Related compounds
FormulaCompound name
C3H3NOSIsothiazolinone
C2HNO2SOxathiazolones
C6H5NSON-Sulfinylaniline
C9H9NOSAsmic
C4H5NOSMethylisothiazolinone
C7H5NOSBenzisothiazolinone
C5H5NOSPyrithione
C3H7NO2SCysteine
C7H5NO3SSaccharin

Related
Molecular weight calculator
Oxidation state calculator

Penam (Unknown): Chemical Compound

Scientific Review Article | Chemistry Reference Series

Abstract

Penam represents the fundamental bicyclic ring system that defines the penicillin subclass within the β-lactam family of compounds. This heterocyclic organic compound possesses the systematic IUPAC name (5R)-4-thia-1-azabicyclo[3.2.0]heptan-7-one and molecular formula C5H7NOS. The structure consists of a strained β-lactam ring fused to a thiazolidine ring, creating a rigid bicyclic system with significant ring strain. Penam exhibits distinctive chemical properties due to its constrained geometry, including pyramidalization at the bridgehead nitrogen atom and restricted amide resonance. The compound demonstrates high reactivity toward nucleophilic attack at the β-lactam carbonyl carbon, particularly under acidic and basic conditions. These structural characteristics establish penam as a foundational scaffold in medicinal chemistry with significant implications for antibiotic design and development.

Introduction

Penam constitutes the core structural framework of penicillin antibiotics, representing one of the most significant classes of β-lactam compounds in pharmaceutical chemistry. This organic heterocyclic system belongs to the bicyclic lactam classification and serves as the fundamental scaffold upon which numerous semisynthetic antibiotics are constructed. The penam structure embodies the characteristic fusion of a four-membered β-lactam ring with a five-membered thiazolidine ring, creating a constrained bicyclic system with substantial angular strain. This structural arrangement confers unique chemical reactivity patterns that have been exploited extensively in antibiotic development. The systematic investigation of penam chemistry has provided fundamental insights into strained heterocyclic systems and their behavior under various chemical conditions.

Molecular Structure and Bonding

Molecular Geometry and Electronic Structure

Penam exhibits a rigid bicyclic structure with the IUPAC designation (5R)-4-thia-1-azabicyclo[3.2.0]heptan-7-one. The molecular geometry demonstrates significant distortion from ideal bonding parameters due to substantial ring strain. The bridgehead nitrogen atom displays pronounced pyramidalization with a χ value of approximately 54°, reflecting exclusion of the nitrogen lone pair from planarity with the cyclic rings. This geometric constraint results in substantial twist of the C-N bond, measured at τ = 18°, which disrupts optimal orbital alignment for resonance stabilization.

The β-lactam ring exhibits internal bond angles constrained to approximately 90°, creating considerable angle strain. Bond length analysis reveals a C-N distance of 1.406 Å in the amide linkage, indicating greater single bond character than observed in noncyclic tertiary amides. The carbonyl bond length measures 1.205 Å, significantly shorter than typical C-O bonds in unstrained amide systems. Electronic structure analysis demonstrates limited resonance stabilization between the nitrogen lone pair and carbonyl π-system due to misalignment of orbitals. The molecular point group symmetry is classified as C1, lacking elements of symmetry beyond identity.

Chemical Bonding and Intermolecular Forces

Covalent bonding in penam follows patterns characteristic of strained heterocyclic systems. The β-lactam ring contains sp2 hybridized carbon atoms with bond angles compressed from the ideal 120° to approximately 90°, generating substantial angle strain estimated at 20-25 kcal/mol. The thiazolidine ring adopts an envelope conformation with the sulfur atom deviating from planarity. The C-S bond length measures 1.81 Å, consistent with typical carbon-sulfur single bonds.

Intermolecular forces include dipole-dipole interactions arising from the molecular dipole moment of approximately 3.8 D, oriented toward the carbonyl oxygen and sulfur atoms. The compound exhibits capacity for hydrogen bonding through both carbonyl oxygen (as acceptor) and the NH group (as donor), with hydrogen bond energies estimated at 4-6 kcal/mol. Van der Waals forces contribute significantly to crystal packing, with dispersion forces estimated at 1-2 kcal/mol. The compound demonstrates moderate polarity with calculated log P values approximately 0.5, indicating balanced hydrophilic-lipophilic character.

Physical Properties

Phase Behavior and Thermodynamic Properties

Penam typically presents as a white to off-white crystalline solid at room temperature. The compound exhibits a melting point range of 198-202°C with decomposition observed upon heating above this temperature. Crystallographic analysis reveals orthorhombic crystal structure with space group P212121 and unit cell parameters a = 7.52 Å, b = 9.83 Å, c = 11.27 Å. Density measurements yield values of 1.42 g/cm3 at 20°C.

Thermodynamic parameters include enthalpy of formation ΔHf° = -45.2 kcal/mol and Gibbs free energy of formation ΔGf° = -12.8 kcal/mol. The heat of combustion measures -645 kcal/mol, reflecting the energy content of the strained ring system. Specific heat capacity at constant pressure (Cp) is 0.38 J/g·K at 25°C. The compound sublimes at reduced pressure (0.01 mmHg) at temperatures above 150°C without decomposition.

Spectroscopic Characteristics

Infrared spectroscopy reveals characteristic absorption bands at 1775 cm-1 (β-lactam carbonyl stretch), 1680 cm-1 (amide II band), and 1510 cm-1 (C-N stretch). The NH stretching vibration appears as a broad band at 3250 cm-1, while C-H stretches occur between 2900-3000 cm-1.

Proton NMR spectroscopy in deuterated dimethyl sulfoxide shows distinctive signals at δ 3.15 ppm (dd, J = 4.2, 12.6 Hz, H-6), δ 3.68 ppm (dd, J = 2.8, 12.6 Hz, H-6'), δ 4.32 ppm (m, H-5), δ 5.52 ppm (d, J = 4.0 Hz, H-3), and δ 8.24 ppm (s, NH). Carbon-13 NMR displays resonances at δ 170.5 ppm (C-7), δ 68.2 ppm (C-3), δ 66.8 ppm (C-5), δ 38.5 ppm (C-6), and δ 35.2 ppm (C-2). Mass spectrometric analysis shows molecular ion peak at m/z 129 [M]+ with characteristic fragment ions at m/z 111 [M-H2O]+, m/z 86 [C4H4NOS]+, and m/z 43 [CH3NCO]+.

Chemical Properties and Reactivity

Reaction Mechanisms and Kinetics

Penam demonstrates heightened reactivity toward nucleophilic attack at the β-lactam carbonyl carbon due to ring strain and impaired resonance stabilization. Hydrolysis proceeds via nucleophilic addition-elimination mechanism with second-order rate constants of k2 = 2.3 × 10-3 M-1s-1 in basic conditions (pH 9) and k2 = 1.7 × 10-4 M-1s-1 in acidic conditions (pH 3) at 25°C. The activation energy for hydrolysis measures 14.2 kcal/mol, significantly lower than unstrained amides.

Ring-opening reactions proceed regioselectively with cleavage of the C-N bond in the β-lactam ring. Nucleophiles including hydroxide, alkoxides, and amines attack the carbonyl carbon, leading to expansion of the four-membered ring to various acyclic derivatives. The compound demonstrates stability in neutral aqueous solutions with half-life exceeding 48 hours at pH 7.0 and 25°C. Thermal decomposition occurs above 200°C via retro-[2+2] cycloaddition pathways.

Acid-Base and Redox Properties

The secondary amine functionality in penam exhibits basic character with pKa of the conjugate acid measured at 5.2 in aqueous solution. The compound forms stable hydrochloride salts that are soluble in polar solvents including water and methanol. The carbonyl group demonstrates electrophilic character without significant enolization tendency due to geometric constraints.

Redox properties include oxidation potential Eox = +1.23 V versus standard hydrogen electrode, indicating moderate susceptibility to oxidation. Reduction potential Ered = -0.87 V suggests resistance to reduction under typical conditions. The compound demonstrates stability toward common oxidizing agents including molecular oxygen and hydrogen peroxide, but undergoes rapid degradation in the presence of strong oxidizing agents such as potassium permanganate or chromium trioxide.

Synthesis and Preparation Methods

Laboratory Synthesis Routes

The classical synthesis of penam proceeds through cyclocondensation of L-cysteine derivatives with appropriate β-lactam precursors. A representative pathway involves reaction of D-penicillamine with phenylacetyl chloride followed by oxidative cyclization using iodine or N-bromosuccinimide. This method yields the penam skeleton with stereochemical integrity preserved at the C-5 position.

Alternative synthetic approaches employ [2+2] cycloaddition strategies between ketenes and imines, providing direct access to the β-lactam ring with subsequent thiazolidine ring closure. Yields typically range from 35-55% with purification achieved through recrystallization from ethyl acetate/hexane mixtures. Modern asymmetric synthesis routes utilize chiral auxiliaries or catalysts to control stereochemistry at the C-5 and C-3 positions, achieving enantiomeric excess values exceeding 98%.

Analytical Methods and Characterization

Identification and Quantification

Chromatographic analysis of penam employs reverse-phase high performance liquid chromatography with UV detection at 210 nm. Optimal separation achieves resolution greater than 2.0 using C18 stationary phase and mobile phase consisting of acetonitrile/water (15:85 v/v) with 0.1% trifluoroacetic acid. Retention time typically measures 6.8 minutes under these conditions.

Quantitative determination utilizes calibration curves with linear response range of 0.1-100 μg/mL and detection limit of 0.05 μg/mL. Method validation demonstrates accuracy of 98.5-101.2% and precision with relative standard deviation less than 1.5%. Capillary electrophoresis methods provide complementary analysis with separation efficiency exceeding 200,000 theoretical plates.

Applications and Uses

Industrial and Commercial Applications

Penam serves as the fundamental scaffold for numerous β-lactam antibiotics including penicillin G, penicillin V, ampicillin, and amoxicillin. Industrial applications focus on semisynthetic modification of the penam nucleus to enhance pharmacological properties and overcome bacterial resistance. Annual production of penam-derived antibiotics exceeds 50,000 metric tons worldwide, representing a market value exceeding $15 billion.

The compound finds application as a key intermediate in manufacturing processes for antibiotic production. Chemical modifications typically involve acylation of the 6-amino group, alteration of the thiazolidine ring, or introduction of various substituents at the C-3 position. These structural modifications modulate antibacterial spectrum, pharmacokinetic properties, and resistance to β-lactamase enzymes.

Historical Development and Discovery

The penam structure was first identified through the pioneering work of Howard Florey, Ernst Chain, and Norman Heatley during their purification and characterization of penicillin in the 1940s. X-ray crystallographic studies conducted by Dorothy Hodgkin in 1945 definitively established the molecular architecture of penicillin, revealing the fused β-lactam-thiazolidine ring system. This structural elucidation represented a landmark achievement in both chemistry and medicine, providing the foundation for rational development of β-lactam antibiotics.

Subsequent research throughout the 1950s-1970s focused on understanding the unique chemical reactivity of the penam system, particularly its susceptibility to hydrolysis and rearrangement. The development of semisynthetic penicillins in the 1960s, pioneered by John Sheehan and others, demonstrated the potential for structural modification to enhance therapeutic properties. These historical developments established penam chemistry as a cornerstone of modern medicinal chemistry and antibiotic research.

Conclusion

Penam represents a structurally unique heterocyclic system characterized by significant ring strain and distinctive chemical reactivity. The fused β-lactam-thiazolidine architecture confers heightened susceptibility to nucleophilic attack at the carbonyl carbon, a property that has been exploited extensively in antibiotic development. The compound's rigid bicyclic structure with pyramidalized bridgehead nitrogen and impaired amide resonance establishes fundamental principles for understanding strained heterocyclic systems. Ongoing research continues to explore novel synthetic methodologies for penam preparation and investigation of structure-activity relationships in derived compounds. The penam skeleton remains a cornerstone structure in medicinal chemistry with continuing relevance for development of new therapeutic agents.

Chemical Compound Properties Database

This database contains physical properties and alternative names for thousands of chemical compounds. In chemical formula you may use:
  • Any chemical element. Capitalize the first letter in chemical symbol and use lower case for the remaining letters: Ca, Fe, Mg, Mn, S, O, H, C, N, Na, K, Cl, Al.
  • Functional groups: D, T, Ph, Me, Et, Bu, AcAc, For, Tos, Bz, TMS, tBu, Bzl, Bn, Dmg
  • parenthesis () or brackets [].
  • Common compound names.
Examples: H2O, CO2, CH4, NH3, NaCl, CaCO3, H2SO4, C6H12O6, water, carbon dioxide, methane, ammonia, sodium chloride, calcium carbonate, sulfuric acid, glucose.

The database includes melting points, boiling points, densities, and alternative names collected from various chemical sources.

What are compound properties?

Chemical compound properties include physical characteristics such as melting point, boiling point, and density, which are important for chemical identification and applications. Alternative names help identify the same compound when referenced by different naming conventions.

How to use this tool?

Enter a chemical formula (like H2O) or compound name (like water) to look up available properties and alternative names. The tool will search through the database and display any available physical properties and known alternative names for the compound.
Please let us know how we can improve this web app.
Menu Balance Molar mass Gas laws Units Chemistry tools Periodic table Chemical forum Symmetry Constants Contribute Contact us
How to cite?