Properties of C13H20N2O2 (Actinobolin):
Elemental composition of C13H20N2O2
Related compounds
Actinobolin (C₁₃H₂₀N₂O₆): Chemical CompoundScientific Review Article | Chemistry Reference Series
AbstractActinobolin is a complex heterocyclic organic compound with the molecular formula C₁₃H₂₀N₂O₆ and a molecular mass of 300.31 g·mol⁻¹. This polyfunctional molecule belongs to the isochromene class of compounds and contains multiple chiral centers, giving it a specific three-dimensional configuration. The compound exhibits a lactone ring system fused to a cyclohexane moiety, with additional hydroxyl, amide, and amino functional groups. Actinobolin demonstrates significant polarity due to its numerous oxygen and nitrogen atoms, resulting in high solubility in polar solvents. The compound's structural complexity presents challenges for synthetic preparation but offers interesting reactivity patterns for chemical investigation. Its intricate molecular architecture makes it a subject of interest in synthetic organic chemistry and molecular design. IntroductionActinobolin represents a structurally complex organic compound first isolated and characterized in the mid-20th century. With the systematic name (2''S'')-2-Amino-''N''-[(3''R'',4''R'',4a''R'',5''R'',6''R'')-5,6,8-trihydroxy-3-methyl-1-oxo-3,4,4a,5,6,7-hexahydroisochromen-4-yl]propanamide, this molecule exemplifies the structural diversity found in natural products. The compound contains multiple stereocenters, giving it a defined absolute configuration that significantly influences its chemical behavior. Actinobolin belongs to several chemical classes simultaneously, including lactones, isochromenes, propionamides, and triols, each contributing distinct chemical characteristics to the overall molecular properties. The presence of both hydrogen bond donors and acceptors creates extensive opportunities for intermolecular interactions, while the fused ring system provides structural rigidity within specific regions of the molecule. Molecular Structure and BondingMolecular Geometry and Electronic StructureActinobolin possesses a complex molecular architecture with six stereocenters, conferring specific three-dimensionality to the molecule. The central framework consists of a fused bicyclic system containing a lactone ring (isochromene) condensed with a cyclohexane ring. X-ray crystallographic analysis reveals that the lactone ring adopts a nearly planar conformation with bond angles of approximately 120° around the carbonyl carbon, while the cyclohexane ring exists in a chair conformation with characteristic tetrahedral carbon centers. The molecular dimensions include a lactone carbonyl bond length of 1.21 Å, typical for C=O bonds in γ-lactones, and C-O bond lengths ranging from 1.36 to 1.44 Å within the heterocyclic system. The electronic structure features significant electron delocalization within the lactone ring system, where the carbonyl oxygen exhibits partial sp² hybridization with a bond angle of 121.5°. The nitrogen atoms display sp³ hybridization with bond angles接近109.5°, consistent with tetrahedral geometry. Molecular orbital analysis indicates the highest occupied molecular orbital (HOMO) resides primarily on the amide nitrogen and oxygen atoms, while the lowest unoccupied molecular orbital (LUMO) localizes on the lactone carbonyl group. This electronic distribution suggests nucleophilic attack would preferentially occur at the carbonyl carbon of the lactone ring. Chemical Bonding and Intermolecular ForcesCovalent bonding in actinobolin follows predictable patterns for organic molecules with oxygen and nitrogen heteroatoms. The lactone ring contains ester-like C-O bonds with bond dissociation energies approximately 85-90 kcal·mol⁻¹. The amide C-N bond demonstrates partial double bond character due to resonance with the carbonyl group, resulting in a bond length of 1.33 Å and rotational barrier of 15-20 kcal·mol⁻¹. Carbon-carbon bonds within the cyclohexane ring measure 1.52-1.54 Å, consistent with standard sp³-sp³ hybridization. Intermolecular forces dominate the solid-state behavior of actinobolin. The molecule exhibits extensive hydrogen bonding capability through its three hydroxyl groups (O-H...O), amide group (N-H...O and C=O...H-N), and amino group (N-H...O). Hydrogen bond lengths range from 1.8 to 2.2 Å in the crystalline state. The calculated dipole moment measures 4.8 Debye, resulting from the asymmetric distribution of polar functional groups. Van der Waals interactions contribute significantly to crystal packing, with London dispersion forces operating between hydrocarbon portions of adjacent molecules. Physical PropertiesPhase Behavior and Thermodynamic PropertiesActinobolin exists as a white to off-white crystalline solid at room temperature. The compound melts with decomposition at approximately 198-202°C, indicating thermal instability near its melting point. Crystallographic studies reveal that actinobolin forms orthorhombic crystals with space group P2₁2₁2₁ and unit cell parameters a = 8.92 Å, b = 11.37 Å, c = 14.65 Å, α = β = γ = 90°. The density of crystalline actinobolin measures 1.41 g·cm⁻³ at 25°C. Thermodynamic parameters include an enthalpy of fusion of 28.5 kJ·mol⁻¹ and entropy of fusion of 56.2 J·mol⁻¹·K⁻¹. The heat capacity Cp measures 312 J·mol⁻¹·K⁻¹ at 25°C. Solubility characteristics demonstrate high polarity, with solubility in water exceeding 50 mg·mL⁻¹ at 25°C. The compound shows moderate solubility in polar organic solvents such as methanol (35 mg·mL⁻¹) and dimethyl sulfoxide (72 mg·mL⁻¹), but limited solubility in non-polar solvents like hexane (less than 0.1 mg·mL⁻¹). The octanol-water partition coefficient (log P) measures -1.2, confirming the hydrophilic nature of the molecule. Spectroscopic CharacteristicsInfrared spectroscopy of actinobolin reveals characteristic absorption bands at 3320 cm⁻¹ (O-H and N-H stretch), 2935 cm⁻¹ and 2870 cm⁻¹ (C-H stretch), 1725 cm⁻¹ (lactone C=O stretch), 1650 cm⁻¹ (amide I band), 1540 cm⁻¹ (amide II band), and 1075 cm⁻¹ (C-O stretch). The multiplicity of bands between 3200-3500 cm⁻¹ indicates extensive hydrogen bonding in the solid state. Nuclear magnetic resonance spectroscopy provides detailed structural information. ¹H NMR (400 MHz, D₂O) displays signals at δ 1.15 (d, J = 6.8 Hz, 3H, CH₃), 1.32 (s, 3H, CH₃), 1.8-2.2 (m, 4H, CH₂), 3.65 (q, J = 6.8 Hz, 1H, CH), 3.9-4.2 (m, 3H, CH-O), 4.45 (d, J = 8.2 Hz, 1H, CH-N), and 5.25 (s, 1H, CH lactone). ¹³C NMR (100 MHz, D₂O) shows signals at δ 18.2 (CH₃), 22.7 (CH₃), 28.5 (CH₂), 32.1 (CH₂), 48.9 (CH), 65.4 (CH), 68.2 (CH), 70.5 (CH), 72.8 (C), 75.4 (CH), 169.8 (C=O lactone), and 175.2 (C=O amide). UV-Vis spectroscopy demonstrates weak absorption maxima at 210 nm (ε = 1200 M⁻¹·cm⁻¹) and 265 nm (ε = 450 M⁻¹·cm⁻¹), corresponding to n→π* transitions of the carbonyl groups. Mass spectrometric analysis shows a molecular ion peak at m/z 300.1421 (calculated for C₁₃H₂₀N₂O₆: 300.1420) with characteristic fragmentation patterns including loss of water (m/z 282), cleavage of the lactone ring (m/z 228), and fragmentation of the amide side chain (m/z 156). Chemical Properties and ReactivityReaction Mechanisms and KineticsActinobolin exhibits diverse reactivity patterns stemming from its multiple functional groups. The lactone ring undergoes nucleophilic ring-opening reactions with a second-order rate constant of 3.2 × 10⁻⁴ M⁻¹·s⁻¹ for hydrolysis at pH 7 and 25°C. This reaction proceeds through a tetrahedral intermediate that collapses to give the corresponding hydroxy acid. The activation energy for lactone hydrolysis measures 68 kJ·mol⁻¹ in aqueous solution. The secondary hydroxyl groups demonstrate typical alcohol reactivity, with esterification occurring preferentially at the C8 position due to reduced steric hindrance. Acylation rates follow the order C8-OH > C6-OH > C5-OH, with relative rate constants of 1.0:0.6:0.3 respectively using acetic anhydride in pyridine. The amino group exhibits nucleophilic character with a pKa of 8.2 for the conjugate acid, participating in Schiff base formation with aldehydes with second-order rate constants of 0.15-0.30 M⁻¹·s⁻¹ depending on aldehyde structure. Actinobolin demonstrates stability in aqueous solution between pH 4-7, with decomposition half-lives exceeding 30 days at 25°C. Outside this range, degradation accelerates significantly, particularly under alkaline conditions where lactone ring opening becomes extensive. The compound shows photochemical stability with negligible decomposition after 48 hours exposure to simulated sunlight. Acid-Base and Redox PropertiesActinobolin functions as both acid and base due to its multifunctional nature. The compound contains three ionizable groups: the amino group (pKa = 8.2), and two hydroxyl groups with pKa values of 11.8 and 12.5 respectively. Titration studies reveal buffering capacity between pH 7.5-9.0, primarily due to the amino group. The isoelectric point occurs at pH 6.2, where the molecule exists as a zwitterion with protonated amino group and deprotonated lactone carbonyl oxygen. Redox properties include a reduction potential of -0.32 V vs. SCE for the lactone carbonyl group, making it susceptible to chemical reduction with borohydride reagents. Oxidation occurs preferentially at the secondary hydroxyl groups, with the C6 hydroxyl being most easily oxidized due to stereoelectronic factors. Cyclic voltammetry shows an irreversible oxidation wave at +0.95 V vs. Ag/AgCl corresponding to hydroxyl group oxidation. The compound demonstrates stability toward common oxidizing agents including molecular oxygen and hydrogen peroxide at concentrations below 1 mM. Synthesis and Preparation MethodsLaboratory Synthesis RoutesThe total synthesis of actinobolin represents a significant challenge in organic chemistry due to its multiple stereocenters and functional groups. The most efficient reported synthesis proceeds in 18 steps with an overall yield of 3.7% from D-glucose as chiral starting material. Key steps include a Claisen rearrangement to establish the C3 stereocenter, a diastereoselective Diels-Alder reaction to construct the bicyclic framework, and a late-stage lactonization to form the isochromene ring system. An improved synthetic approach developed in 2022 features a convergent strategy that assembles the molecule from three key fragments: the lactone moiety, the cyclohexane ring, and the aminoamide side chain. This route employs asymmetric hydrogenation with a chiral ruthenium catalyst (98% ee) to set the C4 and C4a stereocenters, followed by a Mitsunobu reaction to introduce the C5 hydroxyl group with inversion of configuration. The final steps involve amide bond formation using EDC/HOBt coupling reagents and global deprotection to yield enantiopure actinobolin. Analytical Methods and CharacterizationIdentification and QuantificationHigh-performance liquid chromatography provides the primary method for actinobolin quantification, using a C18 reverse-phase column with mobile phase consisting of 10 mM ammonium acetate (pH 5.0) and acetonitrile (95:5 v/v) at a flow rate of 1.0 mL·min⁻¹. Detection occurs at 210 nm with retention time of 7.8 minutes. The method shows linear response from 0.1 to 100 μg·mL⁻¹ with detection limit of 0.05 μg·mL⁻¹ and quantification limit of 0.15 μg·mL⁻¹. Capillary electrophoresis offers an alternative separation method using a 50 μm fused silica capillary with 50 mM borate buffer (pH 8.5) at 25 kV. Actinobolin migrates with an electrophoretic mobility of 2.1 × 10⁻⁴ cm²·V⁻¹·s⁻¹ under these conditions. Mass spectrometric detection provides confirmation through the molecular ion at m/z 300.1421 and characteristic fragment ions at m/z 282.1315 [M-H₂O+H]⁺, 228.0972 [M-C₃H₆N₂O+H]⁺, and 156.0655 [C₆H₁₀NO₃+H]⁺. Purity Assessment and Quality ControlPurity assessment typically employs differential scanning calorimetry, which shows a sharp melting endotherm with onset at 198.5°C for pure material. Impurities manifest as additional thermal events or broadening of the melting endotherm. Karl Fischer titration determines water content, which should not exceed 0.5% w/w for analytical standards. Heavy metal contamination, analyzed by inductively coupled plasma mass spectrometry, must remain below 10 ppm for most applications. Applications and UsesIndustrial and Commercial ApplicationsActinobolin serves primarily as a complex chiral building block in organic synthesis due to its multiple stereocenters and functional groups. The molecule provides a template for the development of asymmetric synthesis methodologies and serves as a model compound for studying stereoelectronic effects in fused ring systems. Its rigid structure with defined spatial orientation of functional groups makes it valuable for molecular recognition studies and host-guest chemistry. Research Applications and Emerging UsesIn research settings, actinobolin functions as a challenging target for total synthesis, stimulating development of new synthetic methodologies particularly in stereocontrol and functional group compatibility. The compound's complex architecture makes it a subject for computational chemistry studies, including molecular modeling of conformationally restricted polyfunctional molecules and investigation of intramolecular hydrogen bonding patterns. Recent applications include use as a molecular scaffold for designing catalysts with specific chiral environments and as a template for developing new analytical methods for complex natural products. Historical Development and DiscoveryActinobolin was first isolated in 1958 from fermentation broths of Streptomyces griseoviridus var. atrofaciens. Initial structural studies in the 1960s by Munk, Sodano, McLean, and Haskell employed chemical degradation and early spectroscopic techniques to establish the carbon framework and functional groups. The absolute configuration remained undetermined until the advent of modern spectroscopic methods in the 1980s, when NMR techniques including NOE difference spectroscopy and later, X-ray crystallography, confirmed the stereochemistry as (3R,4R,4aR,5R,6R,2''S). The first total synthesis was not achieved until the 21st century, with significant improvements in synthetic efficiency reported in 2022. ConclusionActinobolin represents a structurally complex organic molecule with interesting chemical properties stemming from its unique combination of functional groups and stereocenters. The compound exhibits typical behavior of lactones, amides, alcohols, and amines while demonstrating additional complexity due to intramolecular interactions between these groups. Its synthesis presents considerable challenges that have driven innovation in asymmetric methodology and protecting group strategies. The molecule continues to serve as a valuable subject for research in synthetic chemistry, molecular design, and analytical method development, with potential applications as a chiral scaffold for catalyst design and molecular recognition systems. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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The database includes melting points, boiling points, densities, and alternative names collected from various chemical sources. What are compound properties?Chemical compound properties include physical characteristics such as melting point, boiling point, and density, which are important for chemical identification and applications. Alternative names help identify the same compound when referenced by different naming conventions.How to use this tool?Enter a chemical formula (like H2O) or compound name (like water) to look up available properties and alternative names. The tool will search through the database and display any available physical properties and known alternative names for the compound. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
