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Properties of C12H20N2O2

Properties of C12H20N2O2 (Aspergillic acid):

Compound NameAspergillic acid
Chemical FormulaC12H20N2O2
Molar Mass224.2994 g/mol

Chemical structure
C12H20N2O2 (Aspergillic acid) - Chemical structure
Lewis structure
3D molecular structure
Physical properties
AppearancePale yellow needles
Density1.1630 g/cm³
Helium 0.0001786
Iridium 22.562
Melting98.00 °C
Helium -270.973
Hafnium carbide 3958

Alternative Names

1-Hydroxy-6-(2-butanyl)-3-isobutyl-2(1''H'')-pyrazinone
6-Butan-2-yl-1-hydroxy-3-(2-methylpropyl)pyrazin-2-one

Elemental composition of C12H20N2O2
ElementSymbolAtomic weightAtomsMass percent
CarbonC12.01071264.2571
HydrogenH1.00794208.9875
NitrogenN14.0067212.4893
OxygenO15.9994214.2661
Mass Percent CompositionAtomic Percent Composition
C: 64.26%H: 8.99%N: 12.49%O: 14.27%
C Carbon (64.26%)
H Hydrogen (8.99%)
N Nitrogen (12.49%)
O Oxygen (14.27%)
C: 33.33%H: 55.56%N: 5.56%O: 5.56%
C Carbon (33.33%)
H Hydrogen (55.56%)
N Nitrogen (5.56%)
O Oxygen (5.56%)
Mass Percent Composition
C: 64.26%H: 8.99%N: 12.49%O: 14.27%
C Carbon (64.26%)
H Hydrogen (8.99%)
N Nitrogen (12.49%)
O Oxygen (14.27%)
Atomic Percent Composition
C: 33.33%H: 55.56%N: 5.56%O: 5.56%
C Carbon (33.33%)
H Hydrogen (55.56%)
N Nitrogen (5.56%)
O Oxygen (5.56%)
Identifiers
CAS Number28696-18-6
SMILESCCC(C)C1=CN=C(C(=O)N1O)CC(C)C
Hill formulaC12H20N2O2

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FormulaCompound name
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C2HNOFormyl cyanide
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Aspergillic acid (C₁₂H₂₀N₂O₂): Chemical Compound

Scientific Review Article | Chemistry Reference Series

Abstract

Aspergillic acid, systematically named 1-hydroxy-6-(2-butanyl)-3-isobutyl-2(1'H)-pyrazinone, is an organic heterocyclic compound with molecular formula C₁₂H₂₀N₂O₂. This hydroxamic acid derivative crystallizes as pale yellow needles with a melting point of 98°C and density of 1.163 g/cm³. The compound exhibits characteristic pyrazine N-oxide functionality with isobutyl and sec-butyl substituents at positions 3 and 6 respectively. Aspergillic acid demonstrates significant chelating properties toward transition metals, forming stable complexes with iron(III) and other metal ions. The compound displays limited aqueous solubility but dissolves readily in organic solvents including ethanol, diethyl ether, and chloroform, with an experimental log P value of 1.7 indicating moderate hydrophobicity.

Introduction

Aspergillic acid represents an important class of naturally occurring hydroxamic acid derivatives first isolated in crystalline form in 1943 from Aspergillus flavus cultures. This heterocyclic compound belongs to the pyrazine class of organic compounds, specifically functioning as a cyclic hydroxamic acid. The discovery of aspergillic acid marked significant progress in understanding microbial secondary metabolites with metal-chelating properties. Structural elucidation by Dutcher, Spring, and coworkers established the compound as 3-isobutyl-6-sec-butylpyrazinol 1-oxide, confirming its hydroxamic acid character through chemical degradation studies and synthetic confirmation. The compound's ability to form colored complexes with transition metals provides fundamental insights into hydroxamic acid coordination chemistry.

Molecular Structure and Bonding

Molecular Geometry and Electronic Structure

The molecular structure of aspergillic acid consists of a pyrazine ring system with N-oxide functionality at position 1 and hydroxyl group at position 2, creating a hydroxamic acid tautomeric system. The heterocyclic ring adopts planar geometry with bond lengths characteristic of aromatic pyrazine systems: C-N bonds measure approximately 1.34 Å while C-C bonds within the ring average 1.39 Å. The N-O bond in the N-oxide moiety measures 1.36 Å, consistent with similar pyrazine N-oxide compounds. X-ray crystallographic analysis reveals that the isobutyl and sec-butyl substituents adopt extended conformations perpendicular to the pyrazine plane to minimize steric interactions.

Electronic structure calculations indicate significant delocalization of electron density across the hydroxamic acid system. The N-oxide oxygen carries partial negative charge (-0.45 e) while the hydroxamic proton demonstrates increased acidity due to resonance stabilization. Molecular orbital analysis shows highest occupied molecular orbitals localized on the hydroxamic oxygen and N-oxide functionality, while the lowest unoccupied molecular orbitals concentrate on the pyrazine ring system. This electronic distribution facilitates both Brønsted acidity and metal coordination behavior.

Chemical Bonding and Intermolecular Forces

Aspergillic acid exhibits covalent bonding patterns typical of heteroaromatic systems with substantial polarization of the N-oxide bond. The hydroxamic acid functionality exists in tautomeric equilibrium between the N-hydroxy (l-oxide) form and pyridine hydroxamic acid structure. Bond dissociation energies for the O-H bond measure approximately 90 kcal/mol, while the N-O bond demonstrates strength of 55 kcal/mol. Intermolecular forces dominate solid-state packing through hydrogen bonding between the hydroxamic acid proton and N-oxide oxygen of adjacent molecules, forming extended chains with O···O distances of 2.72 Å.

The molecule possesses a calculated dipole moment of 4.2 Debye oriented along the N-O bond vector. Van der Waals interactions between alkyl substituents contribute significantly to crystal packing energy. The compound demonstrates limited hydrogen bonding capacity in solution due to intramolecular hydrogen bonding between the hydroxamic proton and N-oxide oxygen, creating a six-membered chelate ring that reduces intermolecular interactions.

Physical Properties

Phase Behavior and Thermodynamic Properties

Aspergillic acid crystallizes from appropriate solvents as pale yellow needles belonging to the monoclinic crystal system with space group P2₁/c. Unit cell parameters measure a = 12.34 Å, b = 8.76 Å, c = 14.25 Å with β = 112.5°. The compound melts sharply at 98°C with enthalpy of fusion measuring 28.5 kJ/mol. Thermal decomposition commences at 215°C under nitrogen atmosphere. Sublimation occurs at reduced pressure (0.1 mmHg) at 85°C, permitting purification via sublimation techniques.

The density of crystalline material measures 1.163 g/cm³ at 25°C. Molar volume calculates to 195.3 cm³/mol. The compound demonstrates limited solubility in water (0.8 g/L at 25°C) but dissolves readily in polar organic solvents: ethanol (125 g/L), diethyl ether (89 g/L), chloroform (156 g/L), and ethyl acetate (112 g/L). The octanol-water partition coefficient (log P) measures 1.7, indicating moderate hydrophobicity consistent with the alkyl substituent structure.

Spectroscopic Characteristics

Infrared spectroscopy reveals characteristic absorptions at 3250 cm⁻¹ (O-H stretch), 1650 cm⁻¹ (C=O stretch), 1550 cm⁻¹ (N-O stretch), and 1450 cm⁻¹ (pyrazine ring vibrations). The hydroxamic acid functionality produces a broad absorption between 3000-2500 cm⁻¹ indicative of strong hydrogen bonding. Proton NMR spectroscopy in CDCl₃ displays signals at δ 0.95 (doublet, 6H, isobutyl methyl), 1.05 (triplet, 3H, sec-butyl methyl), 1.45 (multiplet, 2H, sec-butyl CH₂), 2.15 (multiplet, 1H, isobutyl methine), 2.45 (doublet, 2H, isobutyl CH₂), 3.25 (multiplet, 1H, sec-butyl methine), and 8.05 ppm (singlet, 1H, pyrazine H-5).

Carbon-13 NMR shows resonances at δ 11.5 (sec-butyl CH₃), 22.3 (isobutyl CH₃), 25.1 (sec-butyl CH₂), 28.5 (isobutyl CH), 30.2 (isobutyl CH₂), 35.4 (sec-butyl CH), 145.5 (C-5), 152.5 (C-6), 155.2 (C-3), and 165.5 ppm (C-2). UV-Vis spectroscopy in ethanol demonstrates absorption maxima at 225 nm (ε = 12,500 M⁻¹cm⁻¹) and 315 nm (ε = 8,200 M⁻¹cm⁻¹) corresponding to π→π* and n→π* transitions respectively. Mass spectral analysis shows molecular ion at m/z 224 with major fragments at m/z 207 [M-OH]⁺, m/z 179 [M-OCH₃]⁺, and m/z 151 [M-C₄H₉]⁺.

Chemical Properties and Reactivity

Reaction Mechanisms and Kinetics

Aspergillic acid undergoes characteristic hydroxamic acid reactions including O-acylation, N-acylation, and dehydration. Esterification with acetic anhydride proceeds at room temperature to form O-acetyl derivatives while N-acylation requires more vigorous conditions. The compound demonstrates thermal instability above 215°C, decomposing to deoxyaspergillic acid (3-isobutyl-6-sec-butyl-2-hydroxypyrazine) through loss of oxygen. This transformation occurs quantitatively when aspergillic acid undergoes dry distillation with copper chromite catalyst.

Bromination reactions proceed electrophilically at the activated pyrazine ring positions. Treatment with bromine in acetic acid produces monobrominated derivatives at position 5 of the pyrazine ring. Subsequent reduction with zinc and acetic acid yields diketopiperazine derivatives through reductive cyclization. Acid-catalyzed hydrolysis with hydrobromic acid (48%) at reflux temperature cleaves the heterocyclic ring, producing equimolar quantities of DL-leucine and DL-isoleucine after extended reaction times.

Acid-Base and Redox Properties

Aspergillic acid functions as a weak acid with pKₐ values of 8.2 for the hydroxamic proton and 3.1 for the conjugate acid of the N-oxide functionality. The compound demonstrates buffering capacity between pH 7.5-8.5 due to the hydroxamic acid dissociation. Redox properties include facile reduction of the N-oxide group using zinc/acetic acid or catalytic hydrogenation over palladium/carbon, producing deoxyaspergillic acid with reduction potential E° = -0.45 V versus standard hydrogen electrode.

The compound forms stable complexes with transition metals, particularly iron(III). Reaction with ferric chloride produces a characteristic green complex with absorption maximum at 625 nm (ε = 2,800 M⁻¹cm⁻¹) in aqueous ethanol. Stability constants for metal complexes follow the order Fe³⁺ > Cu²⁺ > Zn²⁺ > Ni²⁺, with log β₁ = 9.8 for the 1:1 iron(III) complex at 25°C. The chelating behavior follows typical hydroxamic acid coordination through the carbonyl oxygen and N-oxide oxygen atoms, forming five-membered chelate rings.

Synthesis and Preparation Methods

Laboratory Synthesis Routes

Laboratory synthesis of aspergillic acid proceeds through condensation of appropriate α-amino acid derivatives followed by oxidative cyclization. The most efficient synthetic route involves reaction of N-hydroxy-L-leucine and N-acetyl-L-isoleucine in pyridine solvent at 80°C for 24 hours, yielding the dipeptide intermediate. Subsequent oxidation with manganese dioxide in chloroform at room temperature produces the cyclized product after 12 hours. Purification by column chromatography on silica gel (ethyl acetate/hexane 1:1) followed by recrystallization from ethanol/water provides pure aspergillic acid in 45% overall yield.

Alternative synthetic approaches employ 3-isobutyl-6-sec-butyl-2-hydroxypyrazine as starting material. Oxidation with meta-chloroperbenzoic acid in dichloromethane at 0°C produces aspergillic acid after 4 hours with 78% yield. This method benefits from mild reaction conditions and facile purification by simple filtration and solvent removal. The synthetic material demonstrates identical spectroscopic and chromatographic properties to naturally derived compound.

Analytical Methods and Characterization

Identification and Quantification

Aspergillic acid identification employs complementary analytical techniques including thin-layer chromatography, high-performance liquid chromatography, and spectroscopic methods. Reverse-phase HPLC utilizing C18 stationary phase with methanol-water (65:35) mobile phase containing 0.1% formic acid provides excellent separation with retention time of 6.8 minutes. Detection at 315 nm affords sensitivity to 0.1 μg/mL with linear response between 0.5-100 μg/mL.

Capillary electrophoresis with UV detection at 225 nm enables rapid analysis with migration time of 4.2 minutes using 25 mM borate buffer at pH 8.5. Gas chromatography-mass spectrometry requires derivatization by trimethylsilylation, producing a characteristic molecular ion at m/z 296 [M-TMS]⁺ with major fragments at m/z 281 and m/z 207. Quantitative analysis typically employs HPLC with external standard calibration, achieving accuracy of ±2% and precision of ±1.5% relative standard deviation.

Purity Assessment and Quality Control

Purity determination employs differential scanning calorimetry, which shows sharp melting endotherm at 98°C with purity calculated as 99.2% based on van't Hoff equation. Common impurities include deoxyaspergillic acid (retention time 7.4 minutes in HPLC) and brominated derivatives when bromine-containing solvents are used during purification. Karl Fischer titration determines water content typically less than 0.3% w/w in carefully dried samples.

Elemental analysis calculates for C₁₂H₂₀N₂O₂: C, 64.27%; H, 8.99%; N, 12.49%. Experimental values typically fall within ±0.3% of theoretical values. Residual solvent analysis by headspace gas chromatography confirms absence of chlorinated solvents below 10 ppm and ethanol below 50 ppm. Quality control specifications require minimum 98.5% purity by HPLC area normalization with single impurity not exceeding 0.5%.

Applications and Uses

Industrial and Commercial Applications

Aspergillic acid serves primarily as a reference compound in analytical chemistry and as a model hydroxamic acid for coordination chemistry studies. The compound finds application as a standard for HPLC method development in pharmaceutical analysis due to its well-characterized UV absorption properties. Industrial uses include specialty chemical synthesis where it functions as a building block for more complex hydroxamic acid derivatives.

Research Applications and Emerging Uses

Research applications focus on aspergillic acid's metal-chelating properties, particularly in analytical chemistry for iron determination methods. The compound serves as a model system for studying hydroxamic acid coordination geometry and binding constants. Emerging applications investigate its potential as a ligand in catalytic systems for asymmetric synthesis and as a building block for molecular recognition systems. Recent patent literature describes derivatives of aspergillic acid as corrosion inhibitors for ferrous metals in acidic environments.

Historical Development and Discovery

The initial discovery of antibacterial properties in Aspergillus flavus cultures dates to 1940 when White and Hill observed bactericidal activity in culture filtrates. Systematic investigation led to isolation of the active principle in crystalline form in 1943, with the name aspergillic acid reflecting both its fungal origin and acidic character. Structural elucidation proceeded through the 1950s with contributions from Dutcher, Spring, and coworkers who established the hydroxamic acid nature through degradation studies and synthetic confirmation.

Key advances included the recognition of the compound as a pyrazine N-oxide derivative rather than a pyridine system as initially proposed. The determination that aspergillic acid derives biosynthetically from L-leucine and L-isoleucine provided important insights into fungal secondary metabolism. Synthetic studies in the 1960s confirmed the structural assignment and permitted preparation of structural analogs for structure-activity relationship studies.

Conclusion

Aspergillic acid represents a structurally interesting hydroxamic acid derivative with significant coordination chemistry properties. The compound's well-defined molecular structure and characteristic reactivity provide a model system for studying heterocyclic N-oxide chemistry and metal chelation behavior. Future research directions include development of improved synthetic methodologies, investigation of catalytic applications using metal complexes, and exploration of derivatives with modified coordination properties. The compound continues to provide fundamental insights into hydroxamic acid chemistry forty years after its initial structural characterization.

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