Printed from https://www.webqc.org

Properties of GD2

Properties of Gd2 :

Compound NameGD2
Chemical FormulaGd2
Molar Mass314.5 g/mol

Elemental composition of Gd2
ElementSymbolAtomic weightAtomsMass percent
GadoliniumGd157.252100.0000
Mass Percent CompositionAtomic Percent Composition
Gd: 100.00%
Gd Gadolinium (100.00%)
Gd: 100.00%
Gd Gadolinium (100.00%)
Mass Percent Composition
Gd: 100.00%
Gd Gadolinium (100.00%)
Atomic Percent Composition
Gd: 100.00%
Gd Gadolinium (100.00%)
Identifiers
CAS Number65988-71-8 ChemSpider ID: 4952955
SMILESCCCCCCCCCCCCCCCCCC(=O)NC(CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)NC(=O)C)O[C@@]4(C[C@H]([C@@H]([C@H](O4)C(C(CO[C@@]5(C[C@H]([C@@H]([C@H](O5)C(C(CO)O)O)N)O)C(=O)O)O)O)N)O)C(=O)O)O)O)O)C(/C=C/CCCCCCCCCCCCC)O
Hill formulaGd2

Related compounds
FormulaCompound name
GdGadolinium

Related
Molecular weight calculator
Oxidation state calculator

GD2 Ganglioside: Chemical Compound

Scientific Review Article | Chemistry Reference Series

Abstract

GD2 ganglioside (CAS: 65988-71-8) represents a complex acidic glycosphingolipid belonging to the ganglioside family, characterized by its disialylated structure. The compound exhibits the molecular formula C74H134N4O32 and a molecular mass of approximately 1591.89 g·mol-1. GD2 demonstrates amphiphilic properties typical of glycolipids, with a hydrophobic ceramide moiety and a highly polar oligosaccharide head group containing multiple hydroxyl, carboxyl, and acetamido functional groups. The compound's structural complexity includes multiple chiral centers and stereochemical configurations that govern its three-dimensional conformation and intermolecular interactions. GD2 displays limited solubility in aqueous media but forms stable micellar aggregates above its critical micelle concentration. The compound's chemical behavior is dominated by its carbohydrate components, which participate in hydrogen bonding networks and exhibit characteristic glycosidic bond reactivity.

Introduction

GD2 ganglioside constitutes a significant member of the ganglioside family, which comprises sialic acid-containing glycosphingolipids found predominantly in vertebrate tissues. These compounds represent important structural components of cellular membranes and participate in various biological recognition processes. The systematic chemical name according to IUPAC nomenclature is (2''R,4''R,5''S,6''S)-2-[3-[(2''S,3''S,4''R,6''S)-6-[(2''S,3''R,4''R,5''S,6''R)-5-[(2''S,3''R,4''R,5''R,6''R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-2-[(2''R,3''S,4''R,5''R,6''R)-4,5-dihydroxy-2-(hydroxymethyl)-6-[(E)-3-hydroxy-2-(octadecanoylamino)octadec-4-enoxy]oxan-3-yl]oxy-3-hydroxy-6-(hydroxymethyl)oxan-4-yl]oxy-3-amino-6-carboxy-4-hydroxyoxan-2-yl]-2,3-dihydroxypropoxy]-5-amino-4-hydroxy-6-(1,2,3-trihydroxypropyl)oxane-2-carboxylic acid. This nomenclature precisely describes the compound's complex stereochemistry and functional group arrangement.

Molecular Structure and Bonding

Molecular Geometry and Electronic Structure

The GD2 molecule exhibits a highly complex three-dimensional architecture comprising multiple carbohydrate rings connected through glycosidic linkages to a ceramide backbone. The oligosaccharide head group consists of several pyranose rings in chair conformations, with the specific configuration at each anomeric carbon determining the glycosidic bond geometry. The ceramide portion contains a sphingosine base with an 18-carbon chain and a fatty acid component, typically stearic acid (octadecanoic acid), amide-linked to the sphingosine amino group. Molecular modeling studies indicate that the oligosaccharide head group extends approximately 2.5-3.0 nm from the membrane surface when the molecule is incorporated into lipid bilayers.

Electronic structure analysis reveals that the multiple oxygen atoms in the carbohydrate moiety create regions of high electron density, particularly around the glycosidic oxygen atoms and carboxyl groups. The N-acetylneuraminic acid residues contribute significant negative charge to the molecule at physiological pH, with pKa values of approximately 2.6 for the carboxyl groups. The ceramide portion exhibits predominantly hydrophobic character with limited polar functionality beyond the amide linkage. The trans double bond in the sphingosine chain introduces rigidity to the hydrophobic tail and influences the molecule's packing behavior in lipid membranes.

Chemical Bonding and Intermolecular Forces

Covalent bonding in GD2 follows typical patterns for complex carbohydrates and sphingolipids. Glycosidic bonds between monosaccharide units exhibit bond lengths of approximately 1.42 Å for C-O bonds and exhibit characteristic torsional angles governed by the anomeric configuration. The ceramide portion contains amide bonds with partial double bond character (bond length ~1.32 Å) due to resonance between the carbonyl and nitrogen lone pair. The fatty acid chain consists entirely of single bonds with bond lengths of 1.54 Å for C-C bonds and 1.09 Å for C-H bonds.

Intermolecular forces dominate GD2's behavior in aqueous environments. The molecule engages in extensive hydrogen bonding through its numerous hydroxyl groups (donor and acceptor capacity), carboxyl groups (acceptors), and amide groups (donors and acceptors). The sialic acid residues contribute to strong electrostatic interactions due to their negative charge at neutral pH. Van der Waals forces between the hydrocarbon chains promote self-association and membrane incorporation. The compound's critical micelle concentration is approximately 10-7 M, reflecting the balance between hydrophilic and hydrophobic domains.

Physical Properties

Phase Behavior and Thermodynamic Properties

GD2 ganglioside exhibits complex phase behavior characteristic of amphiphilic molecules. In aqueous solution, the compound forms micelles with an aggregation number of approximately 50-100 molecules per micelle. The phase transition temperature from gel to liquid crystalline state occurs at approximately 45°C for pure GD2, though this value varies with hydration state and ionic environment. The enthalpy of micellization is approximately -35 kJ·mol-1, indicating a strongly exothermic self-association process.

The compound demonstrates limited solubility in water (<0.1 mg·mL-1) but greater solubility in polar organic solvents such as dimethyl sulfoxide and dimethylformamide. In methanol/chloroform mixtures (1:1 v/v), solubility exceeds 10 mg·mL-1. The partial specific volume of GD2 is approximately 0.85 mL·g-1, reflecting the dense packing of carbohydrate moieties. The refractive index increment (dn/dc) for aqueous solutions is 0.145 mL·g-1 at 589 nm and 25°C.

Spectroscopic Characteristics

Infrared spectroscopy of GD2 reveals characteristic absorption bands at 3350 cm-1 (O-H stretch), 2920 cm-1 and 2850 cm-1 (C-H stretch), 1650 cm-1 (amide I), 1550 cm-1 (amide II), and 1070 cm-1 (C-O-C glycosidic stretch). The carboxylate groups exhibit asymmetric and symmetric stretches at 1600 cm-1 and 1400 cm-1 respectively.

Nuclear magnetic resonance spectroscopy provides detailed structural information. 1H NMR spectra show characteristic signals at δ 1.2 ppm (lipid chain methylenes), δ 2.0 ppm (N-acetyl methyl protons), δ 3.2-4.0 ppm (carbohydrate ring protons), and δ 4.2-4.4 ppm (anomeric protons). 13C NMR displays resonances at δ 175 ppm (carboxyl and amide carbonyl carbons), δ 100-105 ppm (anomeric carbons), δ 70-80 ppm (other carbohydrate carbons), and δ 25-35 ppm (lipid chain carbons). The trans double bond in the sphingosine base shows coupling constants of J = 15 Hz in the 1H NMR spectrum.

Chemical Properties and Reactivity

Reaction Mechanisms and Kinetics

GD2 undergoes acid-catalyzed hydrolysis of glycosidic bonds with rate constants dependent on the specific linkage. Sialic acid residues are particularly labile under acidic conditions, with hydrolysis rate constants of approximately 10-3 s-1 at pH 2.0 and 25°C. The activation energy for glycosidic bond hydrolysis is approximately 100 kJ·mol-1. Under basic conditions, the compound exhibits stability at pH values below 9.0, but above this value, base-catalyzed degradation of the acetamido groups and sialic acid residues occurs.

The carboxyl groups of the sialic acid residues participate in esterification reactions with diazomethane and other alkylating agents. The half-life for methyl ester formation at room temperature is approximately 30 minutes with excess diazomethane. The primary hydroxyl groups on the carbohydrate moiety can be selectively acetylated with acetic anhydride in pyridine, with reaction completion typically achieved within 4 hours at room temperature.

Acid-Base and Redox Properties

GD2 contains multiple ionizable groups with distinct pKa values. The carboxyl groups of sialic acid residues exhibit pKa values of 2.6±0.2, while the amino groups have pKa values of approximately 9.5±0.3. The compound functions as a polyelectrolyte with an isoelectric point of approximately 3.0. Titration studies reveal a buffer capacity of 0.8 equivalents per pH unit in the range of pH 2.0-4.0.

Redox properties of GD2 are dominated by the carbohydrate moiety. The compound undergoes oxidation with periodate, which cleaves vicinal diols with stoichiometric consumption of 12 moles of periodate per mole of GD2. The reaction proceeds with a second-order rate constant of 0.8 M-1·s-1 at pH 5.0 and 25°C. Reduction with sodium borohydride converts the aldehyde group of the sialic acid residues to alcohols, with complete reduction achieved within 2 hours at room temperature.

Synthesis and Preparation Methods

Laboratory Synthesis Routes

Chemical synthesis of GD2 represents a significant challenge in organic chemistry due to the compound's structural complexity. Total synthesis approaches typically employ convergent strategies that assemble the oligosaccharide portion separately from the ceramide moiety. Protected glycosyl donors, including trichloroacetimidate and thioglycoside derivatives, are used in sequential glycosylation reactions with carefully controlled stereochemistry. The sialic acid residues are typically introduced using sialyl donors with appropriate activating groups such as N-phenyltrifluoroacetimidate.

Key synthetic steps include the formation of β-glycosidic linkages between glucose and ceramide, which requires specific protecting group strategies to ensure regioselectivity. The average overall yield for complete chemical synthesis is less than 1% through multi-step processes (typically 30-40 steps), with the final deprotection steps being particularly critical for obtaining pure product. Enzymatic synthesis methods using glycosyltransferases offer improved stereoselectivity and higher yields for specific glycosidic bond formations.

Analytical Methods and Characterization

Identification and Quantification

Thin-layer chromatography on silica gel plates with chloroform/methanol/water mixtures (60:35:8 v/v/v) provides preliminary identification of GD2, with an Rf value of approximately 0.25. Detection is achieved using resorcinol-HCl reagent for sialic acid-containing compounds, producing a blue-purple coloration. High-performance liquid chromatography on reversed-phase C18 columns with acetonitrile/water/trifluoroacetic acid mobile phases allows for quantitative analysis, with detection limits of approximately 10 ng using UV detection at 205 nm.

Mass spectrometric analysis by MALDI-TOF typically shows the [M-H]- ion at m/z 1590.9 for the monoisotopic mass. Electrospray ionization mass spectrometry in negative ion mode produces characteristic fragment ions at m/z 290.1 (sialic acid), m/z 581.2 (disialyl fragment), and m/z 888.3 (ceramide plus glucose). Quantification using mass spectrometry with internal standards achieves detection limits of 1 pmol with relative standard deviations of less than 5%.

Purity Assessment and Quality Control

Purity assessment of GD2 requires multiple analytical techniques due to the compound's structural complexity. Capillary electrophoresis with UV detection at 200 nm provides separation of GD2 from possible contaminants including other gangliosides and degradation products. The acceptance criterion for pharmaceutical-grade material requires purity greater than 98.0% by HPLC area percentage. Common impurities include GD3 (lacking one galactose residue), GD1a (differing in sialylation pattern), and lyso-GD2 (lacking the fatty acid chain).

Stability testing indicates that GD2 solutions in methanol/chloroform (1:1 v/v) remain stable for at least 6 months when stored at -20°C under nitrogen atmosphere. Aqueous solutions at neutral pH exhibit decomposition rates of less than 1% per month at 4°C. The compound demonstrates sensitivity to light, with accelerated degradation observed under UV illumination.

Applications and Uses

Research Applications and Emerging Uses

GD2 serves as an important research tool in membrane biophysics studies investigating the properties of lipid rafts and membrane microdomains. The compound's tendency to cluster with cholesterol and sphingomyelin makes it valuable for studying lipid-lipid interactions in model membrane systems. Surface plasmon resonance studies utilize GD2 incorporated into liposomes to investigate protein-carbohydrate interactions with various lectins and antibodies.

In materials science, GD2 has been employed in the development of biosensors and diagnostic devices due to its specific molecular recognition properties. The compound's ability to form stable monolayers at air-water interfaces makes it suitable for Langmuir-Blodgett film formation, with collapse pressures exceeding 45 mN·m-1. These films exhibit interesting electrical properties due to the charged sialic acid residues and have been investigated for potential applications in molecular electronics.

Historical Development and Discovery

The discovery of GD2 ganglioside emerged from systematic investigations of brain glycolipids conducted in the mid-20th century. The initial isolation and characterization of gangliosides by Ernst Klenk in the 1930s laid the foundation for understanding these complex lipids. The specific identification of GD2 as a distinct ganglioside species occurred in the 1960s through improved chromatographic separation techniques that allowed resolution of the various ganglioside components.

The complete structural elucidation of GD2 was achieved through a combination of chemical degradation studies, enzymatic hydrolysis, and emerging spectroscopic techniques. The development of mass spectrometry and nuclear magnetic resonance spectroscopy in the 1970s and 1980s provided definitive proof of the compound's structure, including the precise linkage positions and stereochemistry of the carbohydrate moieties. The first total chemical synthesis of GD2 was reported in the early 1990s, representing a milestone in synthetic carbohydrate chemistry.

Conclusion

GD2 ganglioside represents a structurally complex glycosphingolipid with distinctive chemical and physical properties derived from its unique molecular architecture. The compound's amphiphilic nature governs its self-association behavior and interfacial properties, while its multiple functional groups contribute to rich chemical reactivity. Analytical characterization requires sophisticated techniques due to the compound's structural complexity and the presence of numerous stereocenters. Although challenging to synthesize, GD2 serves as valuable material for fundamental studies of membrane structure and function, as well as for developing applications in surface science and molecular recognition. Further research on GD2 chemistry may lead to improved synthetic methodologies and new applications in materials science and nanotechnology.

Chemical Compound Properties Database

This database contains physical properties and alternative names for thousands of chemical compounds. In chemical formula you may use:
  • Any chemical element. Capitalize the first letter in chemical symbol and use lower case for the remaining letters: Ca, Fe, Mg, Mn, S, O, H, C, N, Na, K, Cl, Al.
  • Functional groups: D, T, Ph, Me, Et, Bu, AcAc, For, Tos, Bz, TMS, tBu, Bzl, Bn, Dmg
  • parenthesis () or brackets [].
  • Common compound names.
Examples: H2O, CO2, CH4, NH3, NaCl, CaCO3, H2SO4, C6H12O6, water, carbon dioxide, methane, ammonia, sodium chloride, calcium carbonate, sulfuric acid, glucose.

The database includes melting points, boiling points, densities, and alternative names collected from various chemical sources.

What are compound properties?

Chemical compound properties include physical characteristics such as melting point, boiling point, and density, which are important for chemical identification and applications. Alternative names help identify the same compound when referenced by different naming conventions.

How to use this tool?

Enter a chemical formula (like H2O) or compound name (like water) to look up available properties and alternative names. The tool will search through the database and display any available physical properties and known alternative names for the compound.
Please let us know how we can improve this web app.
Menu Balance Molar mass Gas laws Units Chemistry tools Periodic table Chemical forum Symmetry Constants Contribute Contact us
How to cite?