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Properties of C9H6O4

Properties of C9H6O4 (Ninhydrin):

Compound NameNinhydrin
Chemical FormulaC9H6O4
Molar Mass178.14154 g/mol

Chemical structure
C9H6O4 (Ninhydrin) - Chemical structure
Lewis structure
3D molecular structure
Physical properties
AppearanceWhite solid
Solubility20.0 g/100mL
Density0.8620 g/cm³
Helium 0.0001786
Iridium 22.562
Melting250.00 °C
Helium -270.973
Hafnium carbide 3958

Alternative Names

2,2-Dihydroxyindane-1,3-dione
1,2,3-Indantrione hydrate

Elemental composition of C9H6O4
ElementSymbolAtomic weightAtomsMass percent
CarbonC12.0107960.6800
HydrogenH1.0079463.3949
OxygenO15.9994435.9251
Mass Percent CompositionAtomic Percent Composition
C: 60.68%H: 3.39%O: 35.93%
C Carbon (60.68%)
H Hydrogen (3.39%)
O Oxygen (35.93%)
C: 47.37%H: 31.58%O: 21.05%
C Carbon (47.37%)
H Hydrogen (31.58%)
O Oxygen (21.05%)
Mass Percent Composition
C: 60.68%H: 3.39%O: 35.93%
C Carbon (60.68%)
H Hydrogen (3.39%)
O Oxygen (35.93%)
Atomic Percent Composition
C: 47.37%H: 31.58%O: 21.05%
C Carbon (47.37%)
H Hydrogen (31.58%)
O Oxygen (21.05%)
Identifiers
CAS Number485-47-2
SMILESO=C2c1ccccc1C(=O)C2(O)O
Hill formulaC9H6O4

Related compounds
FormulaCompound name
CHOColanic acid
CH2OFormaldehyde
H2CO3Carbonic acid
C3H8OPropanol
CH2COKetene
C4H8OTetrahydrofuran
CH3OHMethanol
CH2O2Formic acid
C3H6OPropionaldehyde
C7H8OAnisole

Sample reactions for C9H6O4
EquationReaction type
C9H6O4 + O2 = CO2 + H2Ocombustion

Related
Molecular weight calculator
Oxidation state calculator

Ninhydrin (C₉H₆O₄): Chemical Compound

Scientific Review Article | Chemistry Reference Series

Abstract

Ninhydrin (IUPAC name: 2,2-dihydroxyindane-1,3-dione; molecular formula: C₉H₆O₄) is a white crystalline organic compound with significant analytical applications in chemistry and forensic science. The compound exhibits a molecular weight of 178.14 g·mol⁻¹ and decomposes at approximately 250°C. Ninhydrin demonstrates exceptional reactivity toward primary and secondary amines, forming intensely colored derivatives known as Ruhemann's purple. This chromogenic reaction forms the basis for its widespread use in fingerprint detection, amino acid analysis, and protein quantification. The compound exists in equilibrium with its triketone form, indane-1,2,3-trione, and displays unique structural characteristics due to its geminal diol configuration. Ninhydrin's solubility in polar organic solvents such as ethanol and acetone facilitates its application in various analytical techniques including thin-layer chromatography and solid-phase peptide synthesis monitoring.

Introduction

Ninhydrin represents a significant class of organic compounds known as 1,2,3-indantrione hydrates, characterized by their distinctive reactivity with nitrogen-containing compounds. Discovered in 1910 by German-English chemist Siegfried Ruhemann, ninhydrin has evolved from a chemical curiosity to an indispensable analytical reagent in modern chemical practice. The compound's systematic name, 2,2-dihydroxyindane-1,3-dione, accurately describes its molecular architecture featuring a five-membered indane ring system with two carbonyl groups and a geminal diol functionality. Ninhydrin's historical development spans over a century, with its forensic application for latent fingerprint detection proposed by Swedish investigators Oden and von Hofsten in 1954. The compound's unique electronic structure and reactivity patterns have established it as a reference standard in analytical chemistry, particularly in the detection and quantification of amino compounds.

Molecular Structure and Bonding

Molecular Geometry and Electronic Structure

Ninhydrin possesses a planar indane ring system with C2v molecular symmetry. The central carbon atom (C9) exhibits sp³ hybridization due to its geminal diol configuration, while the carbonyl carbons (C1 and C3) demonstrate sp² hybridization with bond angles of approximately 120°. The molecular geometry features bond lengths of 1.23 Å for carbonyl C=O bonds and 1.41 Å for C-C bonds within the aromatic system. The hydroxyl groups attached to the central carbon atom form hydrogen bonds with adjacent carbonyl oxygen atoms, creating a six-membered pseudocyclic structure. This arrangement results in significant electron delocalization throughout the molecule, with the central carbon maintaining a formal charge of +0.32 and carbonyl oxygen atoms carrying formal charges of -0.45. The electronic structure exhibits highest occupied molecular orbital (HOMO) localization on the aromatic system and lowest unoccupied molecular orbital (LUMO) predominantly on the carbonyl groups, facilitating nucleophilic attack at these positions.

Chemical Bonding and Intermolecular Forces

Ninhydrin exhibits complex bonding characteristics with covalent bond energies of 799 kJ·mol⁻¹ for C=O bonds and 459 kJ·mol⁻¹ for C-OH bonds. The molecule demonstrates significant dipole-dipole interactions due to its molecular dipole moment of 4.2 D, primarily oriented along the C2 symmetry axis. Intermolecular hydrogen bonding occurs between hydroxyl groups and carbonyl oxygen atoms of adjacent molecules, with O-H···O bond distances of 2.76 Å and bond energies of approximately 25 kJ·mol⁻¹. Van der Waals forces contribute significantly to crystal packing, with London dispersion forces estimated at 8.3 kJ·mol⁻¹. The compound's polarity, characterized by a calculated log P value of -0.89, governs its solubility behavior in various solvents. Comparative analysis with structural analogs reveals enhanced hydrogen bonding capacity relative to simple diketones due to the geminal diol configuration.

Physical Properties

Phase Behavior and Thermodynamic Properties

Ninhydrin appears as a white crystalline solid with orthorhombic crystal structure belonging to space group P2₁2₁2₁. The compound exhibits a density of 0.862 g·cm⁻³ at 20°C and undergoes decomposition at 250°C without melting. Sublimation occurs at 180°C under reduced pressure (0.1 mmHg). Thermodynamic parameters include enthalpy of formation (ΔHf°) of -495.6 kJ·mol⁻¹, entropy (S°) of 198.7 J·mol⁻¹·K⁻¹, and heat capacity (Cp) of 187.2 J·mol⁻¹·K⁻¹ at 25°C. The enthalpy of solution in water measures -22.4 kJ·mol⁻¹, while the enthalpy of sublimation is 89.3 kJ·mol⁻¹. Refractive index measurements yield values of nD²⁰ = 1.524 for crystalline material. Solubility characteristics include 20 g·L⁻¹ in water at 25°C, 145 g·L⁻¹ in ethanol, and 210 g·L⁻¹ in acetone. The compound demonstrates limited solubility in non-polar solvents such as hexane (0.8 g·L⁻¹) and diethyl ether (12 g·L⁻¹).

Spectroscopic Characteristics

Infrared spectroscopy reveals characteristic vibrational frequencies at 3320 cm⁻¹ (O-H stretch), 1725 cm⁻¹ (C=O symmetric stretch), 1695 cm⁻¹ (C=O asymmetric stretch), and 1610 cm⁻¹ (aromatic C=C stretch). Proton NMR spectroscopy (400 MHz, DMSO-d6) shows signals at δ 10.85 ppm (s, 2H, OH), δ 8.25 ppm (d, J = 7.8 Hz, 2H, aromatic H), δ 7.85 ppm (t, J = 7.5 Hz, 2H, aromatic H), and δ 7.65 ppm (t, J = 7.6 Hz, 2H, aromatic H). Carbon-13 NMR displays resonances at δ 195.2 ppm (C=O), δ 190.4 ppm (C=O), δ 136.7 ppm (aromatic C), δ 134.2 ppm (aromatic CH), δ 128.9 ppm (aromatic CH), and δ 126.5 ppm (aromatic CH). UV-Vis spectroscopy exhibits absorption maxima at 254 nm (ε = 12,400 M⁻¹·cm⁻¹) and 375 nm (ε = 8,200 M⁻¹·cm⁻¹) in ethanol. Mass spectral analysis shows molecular ion peak at m/z 178 with characteristic fragmentation patterns including m/z 160 (loss of H₂O), m/z 132 (loss of CO), and m/z 104 (loss of CO₂).

Chemical Properties and Reactivity

Reaction Mechanisms and Kinetics

Ninhydrin undergoes specific reaction pathways with amines through a well-established mechanism involving condensation, decarboxylation, and hydrolysis steps. The reaction with primary amines proceeds with second-order kinetics, exhibiting rate constants of k = 2.3 × 10⁻³ M⁻¹·s⁻¹ at 25°C in aqueous ethanol. The mechanism initiates with nucleophilic attack by the amine nitrogen on carbonyl carbon, forming a Schiff base intermediate. Subsequent decarboxylation occurs with activation energy of 68.4 kJ·mol⁻¹, releasing carbon dioxide from α-amino acids. The reaction culminates in hydrolysis to form Ruhemann's purple (2-(1,3-dioxoindan-2-yl)iminoindane-1,3-dione), which exhibits intense absorption at 570 nm (ε = 15,000 M⁻¹·cm⁻¹). Secondary amines yield yellow-orange iminium salts with absorption maxima at 470 nm. The compound demonstrates stability in acidic conditions (pH 2-6) but undergoes rapid decomposition in strong alkaline media (pH > 10) with half-life of 45 minutes at pH 12.

Acid-Base and Redox Properties

Ninhydrin exhibits weak acidic character with pKa values of 8.9 for the first hydroxyl group and 12.3 for the second hydroxyl group. The compound demonstrates buffer capacity in the pH range 7.5-9.5, facilitating its use in analytical applications requiring specific pH conditions. Redox properties include standard reduction potential of -0.32 V vs. SHE for the ninhydrin/dihydrin system. Electrochemical behavior shows quasi-reversible one-electron transfer processes with diffusion coefficient of 6.7 × 10⁻⁶ cm²·s⁻¹ in aqueous solution. The compound remains stable in reducing environments but undergoes oxidation with strong oxidizing agents such as potassium permanganate and hydrogen peroxide. Stability studies indicate optimal performance between pH 5.5 and 7.8, with decomposition occurring outside this range through hydrolysis of the geminal diol functionality.

Synthesis and Preparation Methods

Laboratory Synthesis Routes

Ninhydrin synthesis typically proceeds through oxidation of indane-1,3-dione using selenium dioxide or nitric acid as oxidizing agents. The selenium dioxide method involves refluxing indane-1,3-dione (10.0 g, 68.0 mmol) with selenium dioxide (8.5 g, 76.5 mmol) in dioxane (150 mL) for 6 hours at 95°C. Reaction workup includes filtration to remove selenium metal, concentration under reduced pressure, and recrystallization from ethanol to yield white crystals (8.2 g, 72% yield). The nitric acid oxidation method employs concentrated nitric acid (d = 1.42 g·mL⁻¹) with careful temperature control below 10°C during addition, followed by gradual warming to room temperature and recrystallization from water. Purification methods include column chromatography on silica gel using ethyl acetate/hexane (3:7) as eluent and subsequent recrystallization from aqueous ethanol. The synthetic route demonstrates regioselectivity with exclusive formation of the geminal diol configuration due to thermodynamic stability considerations.

Analytical Methods and Characterization

Identification and Quantification

Ninhydrin identification employs thin-layer chromatography on silica gel plates with Rf = 0.45 in n-butanol/acetic acid/water (4:1:1) and detection under UV light (254 nm) or by spraying with ninhydrin reagent (0.2% in ethanol). High-performance liquid chromatography utilizes C18 reverse-phase columns with mobile phase consisting of methanol/water (65:35) containing 0.1% trifluoroacetic acid, retention time of 6.8 minutes, and UV detection at 254 nm. Quantitative analysis employs spectrophotometric methods based on Ruhemann's purple formation at 570 nm with detection limit of 0.2 μg·mL⁻¹ and linear range of 0.5-50 μg·mL⁻¹. Gas chromatography-mass spectrometry after silylation derivatives shows characteristic fragments at m/z 179, 207, and 249. Method validation parameters include accuracy of 98.5%, precision of 2.3% RSD, and recovery of 97-103% across the analytical range.

Purity Assessment and Quality Control

Purity determination employs differential scanning calorimetry with sharp endothermic peak at 250°C corresponding to decomposition. High-purity ninhydrin exhibits melting point decomposition range of 248-251°C. Common impurities include dehydration products (indane-1,2,3-trione), oxidation products, and synthetic intermediates. Quality control specifications require minimum purity of 98.5% by HPLC, water content less than 0.5% by Karl Fischer titration, and residual solvent limits below 0.1% for ethanol and acetone. Stability testing indicates shelf life of 24 months when stored under anhydrous conditions at 2-8°C in amber glass containers. Photodegradation studies show negligible decomposition when protected from light but significant degradation upon prolonged UV exposure.

Applications and Uses

Industrial and Commercial Applications

Ninhydrin serves as a fundamental reagent in forensic science for developing latent fingerprints on porous surfaces including paper, cardboard, and untreated wood. The application utilizes 0.5-2.0% solutions in non-polar solvents such as petroleum ether or fluorocarbon carriers, followed by development at 80% relative humidity and 65°C. In analytical chemistry, ninhydrin finds extensive use in amino acid analysis through post-column derivatization in ion-exchange chromatography, enabling detection limits of 5-10 pmol for most proteinogenic amino acids. The compound facilitates monitoring of solid-phase peptide synthesis through the Kaiser test, where deprotected amino groups produce blue coloration while protected residues remain yellow. Industrial production exceeds 5 metric tons annually worldwide, with primary manufacturers located in Europe, United States, and China. Market demand remains stable with annual growth rate of 3-4%, driven primarily by forensic and analytical applications.

Research Applications and Emerging Uses

Research applications include use as a derivatization agent in capillary electrophoresis and microchip electrophoresis for amino acid separation with enhanced detection sensitivity. Emerging applications incorporate ninhydrin into sensor technologies for amine vapor detection in environmental monitoring and food quality control. Recent developments employ ninhydrin-functionalized nanomaterials for enhanced fingerprint development on non-porous surfaces. The compound serves as a building block in organic synthesis for preparing heterocyclic compounds and as a catalyst in certain oxidation reactions. Patent analysis reveals ongoing innovation in formulation technologies for improved stability and enhanced sensitivity in forensic applications. Research directions focus on developing ninhydrin analogs with improved selectivity and reduced environmental impact.

Historical Development and Discovery

The discovery of ninhydrin by Siegfried Ruhemann in 1910 marked a significant advancement in analytical chemistry. Ruhemann's initial observation of the color reaction with amino acids laid the foundation for subsequent analytical applications. The period between 1910 and 1950 witnessed systematic investigation of ninhydrin's reaction mechanisms and stoichiometry with various nitrogen compounds. The pivotal development occurred in 1954 when Swedish scientists Oden and von Hofsten proposed the application for latent fingerprint detection, revolutionizing forensic science practices. The 1960s through 1980s saw refinement of analytical protocols and understanding of reaction kinetics through detailed mechanistic studies. Recent decades have focused on optimization of formulations for forensic applications and development of enhanced detection methods through combination with other chemical agents such as zinc chloride and 1,2-indandione.

Conclusion

Ninhydrin represents a chemically unique compound with extensive applications in analytical and forensic chemistry. Its distinctive molecular structure featuring a geminal diol configuration adjacent to carbonyl groups confers specific reactivity toward amines and amino acids. The formation of intensely colored Ruhemann's purple provides a sensitive detection method for numerous analytical applications. Current research continues to explore novel formulations and applications while fundamental studies investigate reaction mechanisms and kinetics. Future developments will likely focus on enhanced sensitivity for forensic applications, improved stability characteristics, and environmental considerations in production and use. The compound's established role in chemical analysis ensures its continued importance in both industrial and research settings.

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