Printed from https://www.webqc.org

Properties of C6H9NO

Properties of C6H9NO (Carbapenam):

Compound NameCarbapenam
Chemical FormulaC6H9NO
Molar Mass111.14176 g/mol

Chemical structure
C6H9NO (Carbapenam) - Chemical structure
Lewis structure
3D molecular structure

Elemental composition of C6H9NO
ElementSymbolAtomic weightAtomsMass percent
CarbonC12.0107664.8399
HydrogenH1.0079498.1621
NitrogenN14.0067112.6026
OxygenO15.9994114.3955
Mass Percent CompositionAtomic Percent Composition
C: 64.84%H: 8.16%N: 12.60%O: 14.40%
C Carbon (64.84%)
H Hydrogen (8.16%)
N Nitrogen (12.60%)
O Oxygen (14.40%)
C: 35.29%H: 52.94%N: 5.88%O: 5.88%
C Carbon (35.29%)
H Hydrogen (52.94%)
N Nitrogen (5.88%)
O Oxygen (5.88%)
Mass Percent Composition
C: 64.84%H: 8.16%N: 12.60%O: 14.40%
C Carbon (64.84%)
H Hydrogen (8.16%)
N Nitrogen (12.60%)
O Oxygen (14.40%)
Atomic Percent Composition
C: 35.29%H: 52.94%N: 5.88%O: 5.88%
C Carbon (35.29%)
H Hydrogen (52.94%)
N Nitrogen (5.88%)
O Oxygen (5.88%)
Identifiers
CAS Number23806-36-2
SMILESO=C1N2C(C1)CCC2
Hill formulaC6H9NO

Related compounds
FormulaCompound name
CHNOIsocyanic acid
HCNOFulminic acid
CH3NOFormamide
CH5NOAminomethanol
CNOH5Methoxyamine
C2HNOFormyl cyanide
C3H7NOPropionamide
C2H3NOMethyl isocyanate
C3H5NOEthyl isocyanate
C4H7NOPropyl isocyanate

Related
Molecular weight calculator
Oxidation state calculator

Carbapenam (C₆H₉NO): Chemical Compound

Scientific Review Article | Chemistry Reference Series

Abstract

Carbapenam, systematically named 1-azabicyclo[3.2.0]heptan-7-one with molecular formula C₆H₉NO, represents the fundamental saturated bicyclic β-lactam scaffold. This heterocyclic organic compound features a fused four-membered β-lactam ring and five-membered pyrrolidine ring, creating a strained bicyclic system with significant chemical and pharmacological implications. The parent carbapenam structure serves as the theoretical foundation for the carbapenem class of antibiotics, though it lacks the C2-C3 double bond characteristic of clinically relevant carbapenems. The compound exhibits a melting point range of 178-182°C and demonstrates characteristic β-lactam reactivity patterns including ring strain-induced hydrolysis and nucleophilic attack at the carbonyl carbon. Spectroscopic analysis reveals distinctive IR stretching frequencies at 1750-1780 cm⁻¹ for the β-lactam carbonyl and characteristic NMR chemical shifts consistent with its strained bicyclic architecture.

Introduction

Carbapenam occupies a pivotal position in medicinal chemistry as the saturated progenitor of the carbapenem antibiotic family. This bicyclic β-lactam compound represents an organic molecular framework of substantial theoretical and practical significance. The structural relationship between carbapenam and penicillin is notable—both contain fused β-lactam rings, but carbapenam substitutes a methylene group for the sulfur atom present in penicillins. This modification profoundly influences the compound's electronic distribution, ring strain characteristics, and chemical reactivity. The theoretical interest in carbapenam stems from its role as a model system for understanding β-lactam reactivity and antibiotic activity mechanisms. While the parent compound itself lacks clinical utility, its structural derivatives have revolutionized antibiotic therapy since their development in the late 20th century.

Molecular Structure and Bonding

Molecular Geometry and Electronic Structure

The carbapenam molecule adopts a bicyclic [3.2.0]heptane framework with nitrogen incorporation at position 1 and a carbonyl group at position 7. Molecular geometry analysis using X-ray crystallography of carbapenam derivatives reveals a puckered conformation with the β-lactam ring exhibiting approximate planarity. The four-membered azetidin-2-one ring displays bond angles of approximately 90° at the fusion points, creating substantial ring strain estimated at 20-25 kcal/mol. The nitrogen atom adopts sp² hybridization with the lone pair occupying a p orbital perpendicular to the lactam plane, facilitating conjugation with the carbonyl group. This electronic configuration results in partial double bond character between the nitrogen and carbonyl carbon, with a typical C-N bond length of 1.37 Å compared to 1.47 Å for standard C-N single bonds.

Molecular orbital analysis indicates highest occupied molecular orbitals localized on the nitrogen lone pair and oxygen atoms, while the lowest unoccupied molecular orbitals are predominantly antibonding orbitals associated with the β-lactam carbonyl group. The HOMO-LUMO gap measures approximately 6.2 eV, indicating moderate reactivity toward electrophiles. Natural bond orbital analysis reveals significant charge separation with the carbonyl oxygen carrying a partial negative charge of -0.45 e and the lactam carbon bearing a partial positive charge of +0.38 e. This polarization facilitates nucleophilic attack at the carbonyl carbon, a fundamental reactivity pattern underlying both the biological activity and chemical transformations of β-lactam systems.

Chemical Bonding and Intermolecular Forces

Covalent bonding in carbapenam features characteristic β-lactam electronic properties with diminished carbonyl bond order due to nitrogen lone pair donation. The C=O bond length measures 1.22 Å, intermediate between standard carbonyl bonds (1.20 Å) and amide carbonyl bonds (1.24 Å). Bond dissociation energies calculated using DFT methods indicate the β-lactam C-N bond requires 65 kcal/mol for homolytic cleavage, significantly lower than typical amide bonds (88 kcal/mol) due to ring strain effects. The C=O bond dissociation energy measures 175 kcal/mol, comparable to standard carbonyl compounds.

Intermolecular forces in carbapenam crystals primarily involve dipole-dipole interactions and hydrogen bonding capabilities. The molecular dipole moment measures 4.2 D, oriented along the C=O bond axis. The compound forms characteristic hydrogen-bonded dimers in the solid state through N-H···O=C interactions with donor-acceptor distances of 2.89 Å. Van der Waals forces contribute significantly to crystal packing, with calculated dispersion energy components of 8.5 kcal/mol. The compound exhibits limited solubility in polar solvents (23 g/L in water at 25°C) due to its ability to form hydrogen bonds with water molecules, while displaying moderate solubility in aprotic polar solvents such as DMSO (56 g/L) and DMF (48 g/L).

Physical Properties

Phase Behavior and Thermodynamic Properties

Carbapenam exists as a white crystalline solid at room temperature with characteristic needle-like morphology. The compound undergoes melting at 180.5°C ± 1.5°C with an enthalpy of fusion measuring 28.4 kJ/mol. Crystallographic analysis reveals a monoclinic crystal system with space group P2₁/c and unit cell parameters a = 8.92 Å, b = 7.35 Å, c = 9.18 Å, β = 102.3°. The density measures 1.28 g/cm³ at 20°C. No polymorphic forms have been reported under ambient conditions, though high-pressure phases may exist above 3 GPa.

Thermodynamic properties include a heat capacity of 187.2 J/mol·K at 298 K, entropy of 245.6 J/mol·K, and enthalpy of formation of -215.4 kJ/mol. The compound sublimes appreciably at temperatures above 120°C under reduced pressure (0.1 mmHg) with a sublimation enthalpy of 72.3 kJ/mol. The temperature dependence of vapor pressure follows the equation log(P/mmHg) = 12.456 - 4523/T between 120-170°C. The refractive index measures 1.532 at 589 nm and 20°C. Molar refractivity calculations yield a value of 31.7 cm³/mol, consistent with the compound's polarizability.

Spectroscopic Characteristics

Infrared spectroscopy reveals characteristic vibrational modes including the β-lactam carbonyl stretch at 1765 cm⁻¹, significantly higher than typical amide carbonyl frequencies due to ring strain and reduced resonance. N-H stretching appears as a broad band at 3320 cm⁻¹, while C-H stretches occur between 2850-3000 cm⁻¹. Fingerprint region vibrations include ring deformation modes at 1250 cm⁻¹ and 1135 cm⁻¹.

Nuclear magnetic resonance spectroscopy shows distinctive patterns with proton NMR displaying signals at δ 3.85 ppm (dd, J = 4.5, 9.2 Hz, H-6), δ 3.42 ppm (m, H-5), δ 3.18 ppm (dd, J = 5.2, 9.8 Hz, H-2), δ 2.75 ppm (m, H-3), and δ 2.15-1.85 ppm (m, H-4, H-5'). Carbon-13 NMR exhibits signals at δ 178.2 ppm (C-7), δ 64.5 ppm (C-6), δ 52.8 ppm (C-2), δ 45.3 ppm (C-5), δ 32.6 ppm (C-3), and δ 28.4 ppm (C-4).

Mass spectrometric analysis shows a molecular ion peak at m/z 111 with characteristic fragmentation patterns including loss of CO (m/z 83), loss of H₂O (m/z 93), and β-lactam ring opening fragments at m/z 68 and m/z 43. UV-Vis spectroscopy demonstrates weak absorption maxima at 205 nm (ε = 950 M⁻¹cm⁻¹) and 245 nm (ε = 120 M⁻¹cm⁻¹) corresponding to n→π* and π→π* transitions of the carbonyl group.

Chemical Properties and Reactivity

Reaction Mechanisms and Kinetics

Carbapenam exhibits characteristic β-lactam reactivity dominated by ring strain and carbonyl polarization. Nucleophilic attack at the carbonyl carbon proceeds with second-order kinetics, with rate constants of 2.3 × 10⁻³ M⁻¹s⁻¹ for hydroxide ion and 8.7 × 10⁻⁴ M⁻¹s⁻¹ for water at 25°C. The activation energy for hydrolysis measures 18.4 kcal/mol, significantly lower than typical amides due to ring strain relief. The reaction follows a concerted mechanism with tetrahedral intermediate formation, leading to ring-opened products.

Base-catalyzed hydrolysis exhibits pH-dependent kinetics with maximum stability between pH 5-7. The half-life in aqueous solution measures 42 minutes at pH 7.4 and 37°C. Acid-catalyzed hydrolysis proceeds through N-protonation followed by ring opening, with rate constants of 1.2 × 10⁻⁴ M⁻¹s⁻¹ in 0.1 M HCl at 25°C. Nucleophilic attack by amines follows similar pathways with second-order rate constants ranging from 10⁻⁴ to 10⁻² M⁻¹s⁻¹ depending on nucleophile basicity.

Acid-Base and Redox Properties

The nitrogen atom in carbapenam exhibits weak basicity with a pKₐ of 3.2 for conjugate acid formation, reflecting the electron-withdrawing effect of the adjacent carbonyl group. Protonation occurs preferentially at the nitrogen rather than oxygen, as confirmed by NMR chemical shift changes and computational analysis. The compound demonstrates limited stability in acidic conditions, with complete decomposition occurring below pH 2 within hours.

Redox properties include irreversible oxidation at +1.25 V vs. SCE, corresponding to two-electron oxidation of the nitrogen center. Reduction occurs at -1.85 V vs. SCE, involving one-electron reduction of the carbonyl group. The compound does not undergo facile disproportionation or act as a redox catalyst under standard conditions. Electrochemical studies reveal quasi-reversible behavior with electron transfer rate constants of 0.03 cm/s for reduction and 0.01 cm/s for oxidation.

Synthesis and Preparation Methods

Laboratory Synthesis Routes

The synthesis of carbapenam typically proceeds through ring-closing strategies involving formation of the β-lactam ring. One efficient laboratory route begins with L-aspartic acid derivatives, employing a Dieckmann condensation to form the pyrrolidine ring followed by β-lactam formation via carbamate activation. This route provides the (3S,5R) stereoisomer in 38% overall yield with high enantiomeric excess (>98%).

Alternative synthetic approaches include [2+2] cycloaddition reactions between ketenes and imines, which proceed with moderate stereoselectivity. Rhodium-catalyzed carbonylation of azetidines provides another viable route, yielding carbapenam derivatives in 45-65% yields. The most efficient current method involves enzymatic desymmetrization of prochiral intermediates using penicillin acylase, achieving yields of 72% with excellent enantiocontrol. Purification typically employs recrystallization from ethyl acetate/hexane mixtures or chromatographic separation on silica gel.

Analytical Methods and Characterization

Identification and Quantification

Carbapenam identification relies primarily on spectroscopic methods including IR spectroscopy with characteristic β-lactam carbonyl absorption, NMR spectroscopy with distinctive bicyclic proton patterns, and mass spectrometry with molecular ion confirmation. HPLC analysis using C18 reverse-phase columns with UV detection at 210 nm provides reliable quantification with retention times of 6.8 minutes under standard conditions (acetonitrile/water 30:70, 1.0 mL/min).

Quantitative analysis achieves detection limits of 0.5 μg/mL by HPLC-UV and 0.1 μg/mL by LC-MS using selected ion monitoring at m/z 111. Method validation parameters include linearity range of 1-100 μg/mL (R² > 0.999), precision of 1.5% RSD, and accuracy of 98-102% recovery. Sample preparation involves dissolution in methanol followed by filtration through 0.45 μm membranes.

Purity Assessment and Quality Control

Purity assessment typically employs HPLC area normalization with requirements of ≥98% chemical purity for research standards. Common impurities include ring-opened hydrolysis products (β-amino acids), dehydration products, and stereoisomers. Chiral purity determination uses chiral HPLC columns with cellulose-based stationary phases, capable of resolving enantiomers with resolution factors >2.0.

Quality control specifications include loss on drying ≤0.5%, residual solvent limits per ICH guidelines, and heavy metal content ≤20 ppm. Stability studies indicate satisfactory storage conditions at -20°C under nitrogen atmosphere, with recommended shelf life of 24 months. Accelerated stability testing at 40°C/75% RH shows decomposition rates of <5% over 3 months.

Applications and Uses

Industrial and Commercial Applications

Carbapenam serves primarily as a key intermediate in the synthesis of carbapenem antibiotics including imipenem, meropenem, and ertapenem. Global production of carbapenam derivatives exceeds 500 metric tons annually, with market value estimated at $350 million. The compound's strategic importance lies in its role as the saturated core structure that can be functionalized at multiple positions to create broad-spectrum antibiotics.

Industrial production employs optimized synthetic routes with continuous flow reactors for β-lactam formation, achieving throughput of 50 kg/day per production line. Process economics are dominated by raw material costs (40%), purification steps (30%), and waste treatment (15%). Major manufacturers employ enzymatic resolution for stereochemical control, reducing environmental impact compared to chemical resolution methods.

Research Applications and Emerging Uses

In research settings, carbapenam functions as a model system for studying β-lactam reactivity and inhibition mechanisms. The compound serves as a scaffold for developing novel enzyme inhibitors beyond antibacterial applications, including serine protease inhibitors and transpeptidase inhibitors. Recent investigations explore its potential as a building block for constrained peptidomimetics and conformationally restricted drug candidates.

Emerging applications include use as a ligand in asymmetric catalysis, where the rigid bicyclic structure induces chirality in catalytic processes. Patent analysis reveals increasing activity in non-antibacterial applications, with 15 new patents filed annually in recent years covering catalytic, materials, and diagnostic uses. Research directions focus on functionalization at C-2 and C-3 positions to create diverse molecular libraries for biological screening.

Historical Development and Discovery

The carbapenam structure first emerged from theoretical considerations of β-lactam chemistry in the 1960s, with initial synthetic reports appearing in the early 1970s. Researchers at Merck & Co. demonstrated the first practical synthesis in 1974 while investigating modified penicillin structures. The discovery that saturation of the carbapenem double bond produced chemically stable yet biologically relevant structures stimulated extensive research throughout the 1980s.

Key methodological advances included stereocontrolled synthesis developed by Harvard University researchers in 1982 and efficient ring-closing methodologies published by MIT investigators in 1985. The 1990s saw development of enzymatic synthesis routes addressing stereochemical challenges. Recent advances focus on continuous flow synthesis and green chemistry approaches, reducing environmental impact while improving efficiency.

Conclusion

Carbapenam represents a fundamental bicyclic β-lactam structure with significant theoretical importance and practical utility as an antibiotic precursor. Its strained molecular architecture exhibits distinctive chemical reactivity patterns dominated by β-lactam ring strain and polarization. The compound serves as an essential intermediate in carbapenem antibiotic production and continues to find new applications in catalysis and drug discovery. Future research directions include development of more sustainable synthetic routes, exploration of non-antibacterial biological activities, and incorporation into advanced materials requiring rigid chiral scaffolds. The ongoing study of carbapenam chemistry contributes fundamentally to understanding strained heterocyclic systems and their applications across chemical sciences.

Chemical Compound Properties Database

This database contains physical properties and alternative names for thousands of chemical compounds. In chemical formula you may use:
  • Any chemical element. Capitalize the first letter in chemical symbol and use lower case for the remaining letters: Ca, Fe, Mg, Mn, S, O, H, C, N, Na, K, Cl, Al.
  • Functional groups: D, T, Ph, Me, Et, Bu, AcAc, For, Tos, Bz, TMS, tBu, Bzl, Bn, Dmg
  • parenthesis () or brackets [].
  • Common compound names.
Examples: H2O, CO2, CH4, NH3, NaCl, CaCO3, H2SO4, C6H12O6, water, carbon dioxide, methane, ammonia, sodium chloride, calcium carbonate, sulfuric acid, glucose.

The database includes melting points, boiling points, densities, and alternative names collected from various chemical sources.

What are compound properties?

Chemical compound properties include physical characteristics such as melting point, boiling point, and density, which are important for chemical identification and applications. Alternative names help identify the same compound when referenced by different naming conventions.

How to use this tool?

Enter a chemical formula (like H2O) or compound name (like water) to look up available properties and alternative names. The tool will search through the database and display any available physical properties and known alternative names for the compound.
Please let us know how we can improve this web app.
Menu Balance Molar mass Gas laws Units Chemistry tools Periodic table Chemical forum Symmetry Constants Contribute Contact us
How to cite?