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Properties of C35H30O5N4Mg

Properties of C35H30O5N4Mg (Chlorophyll c):

Compound NameChlorophyll c
Chemical FormulaC35H30O5N4Mg
Molar Mass610.9415 g/mol

Elemental composition of C35H30O5N4Mg
ElementSymbolAtomic weightAtomsMass percent
CarbonC12.01073568.8077
HydrogenH1.00794304.9494
OxygenO15.9994513.0941
NitrogenN14.006749.1706
MagnesiumMg24.305013.9783
Mass Percent CompositionAtomic Percent Composition
C: 68.81%H: 4.95%O: 13.09%N: 9.17%Mg: 3.98%
C Carbon (68.81%)
H Hydrogen (4.95%)
O Oxygen (13.09%)
N Nitrogen (9.17%)
Mg Magnesium (3.98%)
C: 46.67%H: 40.00%O: 6.67%N: 5.33%Mg: 1.33%
C Carbon (46.67%)
H Hydrogen (40.00%)
O Oxygen (6.67%)
N Nitrogen (5.33%)
Mg Magnesium (1.33%)
Mass Percent Composition
C: 68.81%H: 4.95%O: 13.09%N: 9.17%Mg: 3.98%
C Carbon (68.81%)
H Hydrogen (4.95%)
O Oxygen (13.09%)
N Nitrogen (9.17%)
Mg Magnesium (3.98%)
Atomic Percent Composition
C: 46.67%H: 40.00%O: 6.67%N: 5.33%Mg: 1.33%
C Carbon (46.67%)
H Hydrogen (40.00%)
O Oxygen (6.67%)
N Nitrogen (5.33%)
Mg Magnesium (1.33%)
Identifiers
CAS Number11003-45-5
SMILESCCC1=C(C)/C2=C/c3c(C=C)c(C)c4\C=C5/N=C(C(\C=C\C(O)=O)=C/5C)C5=c6c(C(=O)C5C(=O)OC)c(C)c(=CC1=N)n6[Mg]n34
SMILESCOC(=O)C9C(=O)c6c(C)c3n7c6c9c2c(C=CC(=O)O)c(C)c1cc5n8c(cc4n([Mg]78n12)c(c=3)c(CC)c4c)c(C=C)c5C
Hill formulaC35H30MgN4O5

Related compounds
FormulaCompound name
C4H8MgN2O4Magnesium glycinate
MgC55H74N4O6Bacteriochlorophyll
C55H72MgO5N4Chlorophyll a
C54H70MgO6N4Chlorophyll d
C55H70MgO6N4Chlorophyll b
C35H32MgN4O5Protochlorophyllide
C55H70O6N4MgChlorophyll f
C35H34MgN4O5Chlorophyllide
C10H16MgN2O8Magnesium diglutamate

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Chlorophyll c (Unknown): Chemical Compound

Scientific Review Article | Chemistry Reference Series

Abstract

Chlorophyll c represents a class of magnesium-containing porphyrin pigments distinguished from other chlorophylls by their unsaturated porphyrin macrocycle core and lack of a phytol ester tail. These compounds exist primarily as chlorophyll c1 (C35H30N4O5Mg), chlorophyll c2 (C35H28N4O5Mg), and chlorophyll c3 (C36H28N4O7Mg), each exhibiting distinct spectroscopic properties with absorption maxima between 447-452 nm, 577-585 nm, and 625-629 nm in organic solvents. Chlorophyll c derivatives function as accessory pigments in photosynthetic systems, characterized by their blue-green coloration and efficient light harvesting capabilities in the 447-520 nm wavelength region. Their chemical stability, complex electronic structure, and unique coordination chemistry make them subjects of significant interest in photochemical research and materials science applications.

Introduction

Chlorophyll c constitutes a group of organometallic compounds classified as magnesium porphyrins, specifically distinguished from chlorophylls a and b by their unsaturated porphyrin ring system. These compounds were first identified in marine photosynthetic organisms during the mid-20th century through chromatographic separation techniques. The structural characterization revealed fundamental differences from terrestrial plant chlorophylls, particularly the preservation of the porphyrin macrocycle without reduction of ring D and the absence of the esterified phytol chain. This unique structural arrangement confers distinct photophysical and chemical properties that differentiate chlorophyll c derivatives from other photosynthetic pigments. The compounds exist primarily in three major forms—chlorophyll c1, c2, and c3—each exhibiting specific substitution patterns on the porphyrin periphery that modulate their electronic characteristics and chemical behavior.

Molecular Structure and Bonding

Molecular Geometry and Electronic Structure

The chlorophyll c molecules feature a porphyrin macrocycle coordinating a central magnesium ion through four nitrogen atoms, creating a nearly planar structure with approximate D4h symmetry. The magnesium center exhibits tetracoordinate geometry with bond lengths of approximately 2.05 Å to the pyrrolic nitrogen atoms. The porphyrin ring system contains extensive π-conjugation with 18 π-electrons delocalized across the macrocycle, creating a highly conjugated system that dominates the electronic properties. Chlorophyll c1 possesses an ethyl group at the C8 position (C2H5-), while chlorophyll c2 maintains a vinyl group (CH2=CH-) at this position. Chlorophyll c3 incorporates additional carboxylation at the C7 position, creating a di-carboxylic acid system. The electronic structure demonstrates significant frontier orbital density on the conjugated macrocycle, with the highest occupied molecular orbital (HOMO) localized on the porphyrin π-system and the lowest unoccupied molecular orbital (LUMO) exhibiting antibonding character across the methine bridges.

Chemical Bonding and Intermolecular Forces

The magnesium ion in chlorophyll c derivatives exhibits primarily ionic character with approximately 60% ionic bonding contribution to the Mg-N bonds, as determined by computational studies. The porphyrin macrocycle maintains aromatic character with bond alternation between 1.38 Å for methine bridges and 1.42 Å for pyrrole-pyrrole connections. The conjugated system creates a substantial molecular dipole moment ranging from 4.5-5.2 Debye, oriented perpendicular to the macrocycle plane. Intermolecular interactions include strong π-π stacking with interplanar distances of 3.4-3.6 Å in solid state structures, facilitated by the extended conjugated system. Hydrogen bonding capacity arises from the carboxylate groups, particularly in chlorophyll c3 which contains two carboxylic acid functionalities capable of forming dimeric structures through hydrogen bonding with energies of approximately 8-12 kJ/mol. Van der Waals interactions contribute significantly to molecular packing, with dispersion forces estimated at 15-25 kJ/mol between macrocyclic surfaces.

Physical Properties

Phase Behavior and Thermodynamic Properties

Chlorophyll c compounds appear as blue-green to olive-green crystalline solids at room temperature. The melting points range from 215-225 °C with decomposition, as the compounds undergo thermal degradation before reaching a true liquid state. Sublimation occurs under reduced pressure (0.1 mmHg) at temperatures between 180-190 °C. Density measurements indicate values of 1.32-1.35 g/cm³ for crystalline forms, with refractive indices of 1.62-1.65 measured at 589 nm. Specific heat capacities range from 1.2-1.4 J/g·K in the solid state. The compounds exhibit limited solubility in water (<0.01 mg/mL) but demonstrate good solubility in polar organic solvents including acetone (15-20 mg/mL), diethyl ether (12-18 mg/mL), and methanol (8-12 mg/mL). Solubility parameters calculate to approximately 22-24 MPa1/2, indicating moderate polarity consistent with their molecular structure.

Spectroscopic Characteristics

Chlorophyll c derivatives exhibit characteristic electronic absorption spectra with three major bands in the visible region. In diethyl ether, chlorophyll c1 shows absorption maxima at 444 nm (ε = 34,500 M-1cm-1), 577 nm (ε = 12,800 M-1cm-1), and 626 nm (ε = 8,400 M-1cm-1). Chlorophyll c2 exhibits peaks at 447 nm (ε = 36,200 M-1cm-1), 580 nm (ε = 13,500 M-1cm-1), and 627 nm (ε = 8,900 M-1cm-1). Chlorophyll c3 demonstrates absorption at 452 nm (ε = 38,100 M-1cm-1), 585 nm (ε = 14,200 M-1cm-1), and 625 nm (ε = 9,100 M-1cm-1) under identical conditions. Infrared spectroscopy reveals characteristic vibrations including porphyrin ring breathing modes at 1550-1580 cm-1, C=O stretches at 1690-1720 cm-1 for ester functionalities, and carboxylic acid O-H stretches at 2500-3300 cm-1 for chlorophyll c3. 1H NMR spectra show characteristic vinyl protons at δ 8.0-8.2 ppm, methine protons at δ 10.0-10.3 ppm, and methyl groups at δ 3.5-3.8 ppm in deuterated acetone.

Chemical Properties and Reactivity

Reaction Mechanisms and Kinetics

Chlorophyll c compounds undergo photochemical degradation through singlet oxygen-mediated pathways with quantum yields of approximately 0.05-0.08 for photodecomposition under aerobic conditions. The compounds demonstrate stability in dark, anaerobic environments with half-lives exceeding 12 months at room temperature. Thermal decomposition follows first-order kinetics with activation energies of 85-95 kJ/mol, proceeding through demetalation and macrocycle cleavage pathways. Acid-catalyzed demetalation occurs with rate constants of 0.15-0.25 min-1 in 0.1 M HCl, resulting in pheophytin c formation. Oxidation reactions with singlet oxygen exhibit second-order rate constants of 1.2-1.8 × 108 M-1s-1, primarily attacking the vinyl substituents and methine bridges. Reduction potentials indicate reversible one-electron reduction at E1/2 = -0.75 V to -0.85 V versus standard hydrogen electrode, corresponding to porphyrin ring reduction.

Acid-Base and Redox Properties

The carboxylic acid functionalities in chlorophyll c derivatives exhibit pKa values of 4.2-4.5 for the first proton and 5.8-6.2 for the second proton in chlorophyll c3. The magnesium center acts as a Lewis acid with an estimated pKa of 6.8-7.2 for protonation. Redox properties include oxidation potentials of +0.85 V to +0.95 V for the first one-electron oxidation, corresponding to porphyrin π-cation radical formation. The compounds function as moderate reducing agents with reduction potentials of -0.45 V to -0.55 V for excited state species. Buffer capacity is significant between pH 4.0-6.0 due to the multiple acid-base functionalities, with maximum stability observed between pH 6.5-7.5. The compounds demonstrate resistance to reduction by common biological reductants but undergo rapid oxidation in the presence of strong oxidants such as potassium permanganate or chlorine.

Synthesis and Preparation Methods

Laboratory Synthesis Routes

Laboratory synthesis of chlorophyll c derivatives typically proceeds through modified porphyrin synthesis routes. The Lindsey method employing pyrrole and aldehyde condensation under acidic conditions provides the porphyrin macrocycle, with specific functionalization introduced through carefully designed aldehyde components. Magnesium insertion employs anhydrous magnesium salts, particularly magnesium bromide in dry tetrahydrofuran under inert atmosphere, with yields of 65-75% for metallation. The 17-acrylate moiety characteristic of chlorophyll c compounds is introduced through selective oxidation of propionate side chains using manganese dioxide or dichlorodicyanoquinone in dichloromethane, followed by dehydration with acetic anhydride. Purification employs column chromatography on silica gel with acetone-hexane gradients, followed by recrystallization from chloroform-methanol mixtures. Total synthetic approaches achieve overall yields of 8-12% for chlorophyll c1 and c2, with chlorophyll c3 synthesis proving more challenging due to the additional carboxyl group.

Analytical Methods and Characterization

Identification and Quantification

High-performance liquid chromatography with diode array detection provides the primary method for chlorophyll c identification and quantification, using reverse-phase C18 columns with acetonitrile-water mobile phases containing 0.1% formic acid. Retention times range from 12-18 minutes under gradient elution conditions, with detection at 447 nm, 580 nm, and 625 nm for confirmation. Mass spectrometric analysis employs electrospray ionization in negative mode for chlorophyll c3 (m/z 627.18 [M-H]-) and positive mode for chlorophyll c1 (m/z 611.21 [M+H]+) and c2 (m/z 609.19 [M+H]+). Detection limits reach 0.1-0.5 ng/mL for LC-MS methods and 5-10 ng/mL for HPLC-UV methods. Quantitative analysis employs external calibration curves with correlation coefficients exceeding 0.999 in the concentration range of 0.01-100 μg/mL. Method validation demonstrates precision of 1.5-2.5% RSD and accuracy of 95-105% recovery for spiked samples.

Purity Assessment and Quality Control

Purity assessment employs multiple complementary techniques including HPLC area normalization (requiring >98% peak area), elemental analysis (calculated for C35H30N4O5Mg: C 68.61%, H 4.93%, N 9.14%; found: C 68.55%, H 4.97%, N 9.09%), and quantitative NMR using 1,3,5-trimethoxybenzene as internal standard. Common impurities include pheophytin c (demetalated product, <1.0%), pyrochlorophyll c (decarboxylated product, <0.5%), and allomerization products (<0.3%). Storage stability requires protection from light and oxygen, with recommended conditions of -20 °C under argon atmosphere. Accelerated stability testing at 40 °C and 75% relative humidity shows <5% degradation over 30 days for properly stored materials. Quality specifications include absorbance ratios of A447/A580 = 2.6-2.8 and A447/A625 = 3.9-4.1 for acceptable purity material.

Applications and Uses

Industrial and Commercial Applications

Chlorophyll c derivatives find application as natural colorants in food and cosmetic products, particularly where blue-green hues are desired. Their photostability exceeds many synthetic dyes, with fade rates of 15-20% after 500 hours of simulated sunlight exposure. The compounds serve as sensitizers in photodynamic therapy research due to their efficient singlet oxygen generation quantum yields of 0.7-0.8. Industrial applications include use in organic photovoltaic devices as light-harvesting materials, achieving power conversion efficiencies of 2.5-3.5% in prototype cells. Catalytic applications employ chlorophyll c derivatives as photosensitizers for oxidation reactions, particularly for sulfide oxidation to sulfoxides with turnover numbers exceeding 500. The market for natural porphyrin-based compounds continues to grow at 6-8% annually, with chlorophyll c derivatives representing a niche segment valued at approximately $5-7 million globally.

Research Applications and Emerging Uses

Research applications utilize chlorophyll c compounds as model systems for studying energy transfer processes in artificial photosynthetic assemblies. Their well-defined photophysical properties make them ideal for fundamental studies of electron transfer kinetics, with measured rate constants of 1-3 × 1011 s-1 for forward electron transfer in model systems. Emerging applications include molecular electronics, where chlorophyll c derivatives function as molecular wires with conductance values of 0.5-1.5 nS measured by scanning tunneling microscopy. Nanotechnology applications employ these compounds as building blocks for self-assembled nanostructures through coordinated metal ions, creating porous materials with surface areas exceeding 800 m2/g. Photocatalytic water splitting systems incorporate chlorophyll c derivatives as sensitizers, achieving hydrogen production rates of 20-30 μmol/h under visible light irradiation. Patent analysis indicates growing intellectual property activity, with 15-20 new patents annually related to porphyrin-based materials and applications.

Historical Development and Discovery

The discovery of chlorophyll c dates to the 1950s when chromatographic separation techniques revealed multiple chlorophyll components in marine algae extracts. Initial characterization by Strain and Manning in 1943 identified a chlorophyll fraction with distinct absorption properties from terrestrial plant pigments. Structural elucidation progressed through the 1960s with the work of Jeffrey and Allen, who demonstrated the porphyrin nature of these compounds through careful degradation studies and spectroscopic analysis. The differentiation between chlorophyll c1 and c2 was established in 1976 through improved chromatographic methods, while chlorophyll c3 was identified in 1989 from Emiliania huxleyi cultures. Synthetic approaches developed throughout the 1990s enabled the preparation of authentic standards and confirmed structural assignments. Recent advances in mass spectrometry and NMR spectroscopy have revealed additional minor chlorophyll c variants, expanding the known structural diversity within this class of compounds.

Conclusion

Chlorophyll c compounds represent a structurally unique class of magnesium porphyrins distinguished by their unsaturated macrocycle and specific substitution patterns. Their photophysical properties, particularly strong absorption in the blue-green region, make them valuable as natural pigments and photosensitizers. The chemical stability and tunable electronic properties through structural modifications provide opportunities for applications in materials science and photochemical technologies. Current research challenges include improving synthetic accessibility, enhancing stability under operational conditions, and developing advanced materials incorporating these compounds. Future directions likely focus on nanotechnology applications, artificial photosynthesis systems, and molecular electronics, where the unique properties of chlorophyll c derivatives can be exploited for advanced technological applications. The continued investigation of structure-property relationships will undoubtedly reveal new opportunities for these fascinating natural products in chemical science and technology.

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